Effects of microbial-derived biotics (meta/pharma/post-biotics) on the modulation of gut microbiome and metabolome; general aspects and emerging trends

Probiotic Potential of a Folate-Producing Strain Latilactobacillus sakei LZ217 and Its Modulation Effects on Human Gut Microbiota

(2022) Manman Liu et al.   Foods

Functional and health-promoting properties of probiotics’ exopolysaccharides; isolation, characterization, and applications in the food industry

(2022) Hadi Pourjafar et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Ex vivo folate production by fecal bacteria does not predict human blood folate status: Associations between dietary patterns, gut microbiota, and folate metabolism

(2022) Anna M. Malinowska et al.   FOOD RESEARCH INTERNATIONAL

Hydrogen Sulfide Produced by Gut Bacteria May Induce Parkinson’s Disease

(2022) Kari Erik Murros   Cells

Lactococcus lactis NCDO2118 exerts visceral antinociceptive properties in rat via GABA production in the gastro-intestinal tract

(2022) Valérie Laroute et al.   eLife

Combining fecal microbiome and metabolomics to reveal the disturbance of gut microbiota in liver injury and the therapeutic mechanism of shaoyao gancao decoction

(2022) Jingwei Li et al.   Frontiers in Pharmacology

Probiotics and live biotherapeutic products aiming at cancer mitigation and patient recover

(2022) Zelinda Schemczssen-Graeff et al.   Frontiers in Genetics

Total Sesquiterpenoids of Loquat Leaves Alleviated High-Fat Diet-Induced Obesity by Targeting Fecal Metabolic Profiling and Gut Microbiota Composition

(2022) Tunyu Jian et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Tissue-wide metabolomics reveals wide impact of gut microbiota on mice metabolite composition

(2022) Iman Zarei et al.   Scientific Reports

(R)Evolution in Allergic Rhinitis Add-On Therapy: From Probiotics to Postbiotics and Parabiotics

(2022) Martina Capponi et al.   Journal of Clinical Medicine

Interaction between Plasma Metabolomics and Intestinal Microbiome in db/db Mouse, an Animal Model for Study of Type 2 Diabetes and Diabetic Kidney Disease

(2022) Chenhua Wu et al.   Metabolites

Postbiotics: Current Trends in Food and Pharmaceutical Industry

(2022) Priyamvada Thorakkattu et al.   Foods

Omics in gut microbiome analysis

(2021) Tae Woong Whon et al.   JOURNAL OF MICROBIOLOGY

Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson’s disease

(2021) Dorines Rosario et al.   Cell Reports

Effects of gut microbiota on atherosclerosis through hydrogen sulfide

(2021) Dan-Dan Gui et al.   EUROPEAN JOURNAL OF PHARMACOLOGY

Microbial exopolysaccharides: role in functional food engineering and gut‐health management

(2021) Chakravarthy Muninathan et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCE AND TECHNOLOGY

gutMGene: a comprehensive database for target genes of gut microbes and microbial metabolites

(2021) Liang Cheng et al.   NUCLEIC ACIDS RESEARCH

A Role for Folate in Microbiome-Linked Control of Autoimmunity

(2021) Christine Mölzer et al.   Journal of Immunology Research

HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data

(2021) Pranvera Hiseni et al.   Microbiome

Gut Microbiota is an Important Source of Bacteriocins and Their In Situ Expression Can Be Explored for Treatment of Bacterial Infections

(2021) Djamel Drider   Probiotics and Antimicrobial Proteins

Metabolomics: An analytical technique for food processing evaluation

(2021) Michele Utpott et al.   FOOD CHEMISTRY

Simulated digestion and fecal fermentation behaviors of exopolysaccharides from Paecilomyces cicadae TJJ1213 and its effects on human gut microbiota

(2021) Juanjuan Tian et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

GMrepo v2: a curated human gut microbiome database with special focus on disease markers and cross-dataset comparison

(2021) Die Dai et al.   NUCLEIC ACIDS RESEARCH

Yeast β-Glucan Altered Intestinal Microbiome and Metabolome in Older Hens

(2021) Wenrui Zhen et al.   Frontiers in Microbiology

A chemiluminescence reaction consisting of manganese(IV), sodium sulfite, and sulfur- and nitrogen-doped carbon quantum dots, and its application for the determination of oxytetracycline

(2020) Mohammad Amjadi et al.   MICROCHIMICA ACTA

The Role of Short-Chain Fatty Acids From Gut Microbiota in Gut-Brain Communication

(2020) Ygor Parladore Silva et al.   Frontiers in Endocrinology

Polysaccharides: bowel health and gut microbiota

(2020) Moon Ho Do et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

SCFA: mechanisms and functional importance in the gut

(2020) Camille Martin-Gallausiaux et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

In vitro prebiotic activities of exopolysaccharide from Leuconostoc pseudomesenteroides XG5 and its effect on the gut microbiota of mice

(2020) Lei Pan et al.   Journal of Functional Foods

Hydrogen sulfide toxicity in the gut environment: Meta-analysis of sulfate-reducing and lactic acid bacteria in inflammatory processes

(2020) Dani Dordević et al.   Journal of Advanced Research

Nutrition and Gastrointestinal Microbiota, Microbial-Derived Secondary Bile Acids, and Cardiovascular Disease

(2020) Jose Rodríguez-Morató et al.   Current Atherosclerosis Reports

Functional Roles of B‐Vitamins in the Gut and Gut Microbiome

(2020) Takashi Uebanso et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Postbiotics and paraprobiotics: From concepts to applications

(2020) P.F. Cuevas-González et al.   FOOD RESEARCH INTERNATIONAL

CoMNRank: An integrated approach to extract and prioritize human microbial metabolites from MEDLINE records

(2020) QuanQiu Wang et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Microbial Metabolites, Postbiotics, and Intestinal Epithelial Function

(2020) Aida Mayorgas et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Bifidobacterium adolescentis as a key member of the human gut microbiota in the production of GABA

(2020) Sabrina Duranti et al.   Scientific Reports

Exopolysaccharides from Bacillus amyloliquefaciens DMBA-K4 ameliorate dextran sodium sulfate-induced colitis via gut microbiota modulation

(2020) Jia-hua Kuang et al.   Journal of Functional Foods

Benefits of bacteria-derived exopolysaccharides on gastrointestinal microbiota, immunity and health

(2020) Marjolein M.P. Oerlemans et al.   Journal of Functional Foods

Metabolic drivers of non-alcoholic fatty liver disease

(2020) Kendra K. Bence et al.   Molecular Metabolism

A review on preparation and chemical analysis of postbiotics from lactic acid bacteria

(2020) Mehran Moradi et al.   ENZYME AND MICROBIAL TECHNOLOGY

Effects of exopolysaccharide from Lactobacillus rhamnosus on human gut microbiota in in vitro fermentation model

(2020) Yuzhu Zhu et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Postbiotics: Metabolites and mechanisms involved in microbiota-host interactions

(2020) Maria do Carmo Gouveia Peluzio et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Bacteriocins: Classification, synthesis, mechanism of action and resistance development in food spoilage causing bacteria

(2019) Rashmi Kumariya et al.   MICROBIAL PATHOGENESIS

Health Benefits of Heat-Killed (Tyndallized) Probiotics: An Overview

(2019) Núria Piqué et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The role of short-chain fatty acids in microbiota–gut–brain communication

(2019) Boushra Dalile et al.   Nature Reviews Gastroenterology & Hepatology

Microbiome–metabolomics reveals gut microbiota associated with glycine-conjugated metabolites and polyamine metabolism in chronic kidney disease

(2019) Ya-Long Feng et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

LABiocin database: a new database designed specifically for Lactic Acid Bacteria bacteriocins

(2019) Imad Al Kassaa et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

A family of anti-Bacteroidales peptide toxins wide-spread in the human gut microbiota

(2019) Michael J. Coyne et al.   Nature Communications

Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences

(2019) Himel Mallick et al.   Nature Communications

Exopolysaccharides from Lactobacillus buchneri TCP016 attenuate LPS and D-GalN induced liver injury by modulating the gut microbiota

(2019) Rihua Xu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Effects of an Escherichia coli exopolysaccharide on human and mouse gut microbiota in vitro

(2019) Baiyuan Li et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

gutMDisorder: a comprehensive database for dysbiosis of the gut microbiota in disorders and interventions

(2019) Liang Cheng et al.   NUCLEIC ACIDS RESEARCH

Clostridium butyricum, a butyrate-producing probiotic, inhibits intestinal tumor development through modulating Wnt signaling and gut microbiota

(2019) Danfeng Chen et al.   CANCER LETTERS

A Brief Review on the Non-protein Amino Acid, Gamma-amino Butyric Acid (GABA): Its Production and Role in Microbes

(2019) Sabna B. Sarasa et al.   CURRENT MICROBIOLOGY

Simulated digestion and fermentation in vitro by human gut microbiota of intra- and extra-cellular polysaccharides from Aspergillus cristatus

(2019) Ying Rui et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Lactobacillus acidophilus JCM 1132 Strain and Its Mutant with Different Bacteriocin-Producing Behaviour Have Various In Situ Effects on the Gut Microbiota of Healthy Mice

(2019) Gang Wang et al.   Microorganisms

Disbiome database: linking the microbiome to disease

(2018) Yorick Janssens et al.   BMC MICROBIOLOGY

Exopolysaccharide producing lactic acid bacteria: Their techno-functional role and potential application in gluten-free bread products

(2018) Kieran M. Lynch et al.   FOOD RESEARCH INTERNATIONAL

Eubiotics for Food Security at Farm Level: Yeast Cell Wall Products and Their Antimicrobial Potential Against Pathogenic Bacteria

(2018) Elisa Santovito et al.   Foodborne Pathogens and Disease

BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins

(2018) Auke J van Heel et al.   NUCLEIC ACIDS RESEARCH

Microbiota metabolites: Pivotal players of cardiovascular damage in chronic kidney disease

(2018) Carmela Cosola et al.   PHARMACOLOGICAL RESEARCH

Postbiotics: An evolving term within the functional foods field

(2018) J.E. Aguilar-Toalá et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Bifidobacterium breve CCFM683 could ameliorate DSS-induced colitis in mice primarily via conjugated linoleic acid production and gut microbiota modulation

(2018) Bo Yang et al.   Journal of Functional Foods

Human-origin probiotic cocktail increases short-chain fatty acid production via modulation of mice and human gut microbiome

(2018) Ravinder Nagpal et al.   Scientific Reports

A Review: The Fate of Bacteriocins in the Human Gastro-Intestinal Tract: Do They Cross the Gut–Blood Barrier?

(2018) Leon M. T. Dicks et al.   Frontiers in Microbiology

Aspects of Gut Microbiota and Immune System Interactions in Infectious Diseases, Immunopathology, and Cancer

(2018) Veronica Lazar et al.   Frontiers in Immunology

Effects of bifidobacteria-produced exopolysaccharides on human gut microbiota in vitro

(2018) Guiyang Liu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bacterial folate biosynthesis and colorectal cancer risk: more than just a gut feeling

(2018) Dieuwertje E. Kok et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

GABA-modulating bacteria of the human gut microbiota

(2018) Philip Strandwitz et al.   Nature Microbiology

The exopolysaccharide properties and structures database: EPS-DB. Application to bacterial exopolysaccharides

(2018) Johnny Birch et al.   CARBOHYDRATE POLYMERS

Antioxidant status and gut microbiota change in an aging mouse model as influenced by exopolysaccharide produced by Lactobacillus plantarum YW11 isolated from Tibetan kefir

(2017) Jian Zhang et al.   JOURNAL OF DAIRY SCIENCE

mVOC 2.0: a database of microbial volatiles

(2017) Marie C Lemfack et al.   NUCLEIC ACIDS RESEARCH

Gut microbiota–derived short-chain fatty acids and kidney diseases

(2017) Lingzhi Li et al.   Drug Design Development and Therapy

Intestinal Microbiota-Derived GABA Mediates Interleukin-17 Expression during Enterotoxigenic Escherichia coli Infection

(2017) Wenkai Ren et al.   Frontiers in Immunology

The bacteriocin bactofencin A subtly modulates gut microbial populations

(2016) Caitriona M. Guinane et al.   ANAEROBE

GABA production and structure of gadB / gadC genes in Lactobacillus and Bifidobacterium strains from human microbiota

(2016) R.A. Yunes et al.   ANAEROBE

Human microbial metabolites as a source of new drugs

(2016) Somdutta Saha et al.   DRUG DISCOVERY TODAY

Challenges of metabolomics in human gut microbiota research

(2016) Kirill S. Smirnov et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

GABA-producing Bifidobacterium dentium modulates visceral sensitivity in the intestine

(2016) K. Pokusaeva et al.   NEUROGASTROENTEROLOGY AND MOTILITY

The Potential of Class II Bacteriocins to Modify Gut Microbiota to Improve Host Health

(2016) Özgün C. O. Umu et al.   PLoS One

Bacteriocin from epidemicListeriastrains alters the host intestinal microbiota to favor infection

(2016) Juan J. Quereda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabiotics: One Step ahead of Probiotics; an Insight into Mechanisms Involved in Anticancerous Effect in Colorectal Cancer

(2016) Mridul Sharma et al.   Frontiers in Microbiology

Gut Microbiota Profiling: Metabolomics Based Approach to Unravel Compounds Affecting Human Health

(2016) Pamela Vernocchi et al.   Frontiers in Microbiology

Antibiotic-Induced Alterations of the Gut Microbiota Alter Secondary Bile Acid Production and Allow for Clostridium difficile Spore Germination and Outgrowth in the Large Intestine

(2016) Casey M. Theriot et al.   mSphere

In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project’s reference genome database

(2015) Calum J. Walsh et al.   BMC MICROBIOLOGY

Exopolysaccharides Produced by Lactic Acid Bacteria and Bifidobacteria as Fermentable Substrates by the Intestinal Microbiota

(2015) Nuria Salazar et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Hydrogen Sulfide Protects from Colitis and Restores Intestinal Microbiota Biofilm and Mucus Production

(2015) Jean-Paul Motta et al.   INFLAMMATORY BOWEL DISEASES

APD3: the antimicrobial peptide database as a tool for research and education

(2015) Guangshun Wang et al.   NUCLEIC ACIDS RESEARCH

Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota

(2015) Weili Xiong et al.   PROTEOMICS

Fate, activity, and impact of ingested bacteria within the human gut microbiota

(2015) Muriel Derrien et al.   TRENDS IN MICROBIOLOGY

Common occurrence of antibacterial agents in human intestinal microbiota

(2015) Fatima Drissi et al.   Frontiers in Microbiology

Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes

(2015) Stefanía Magnúsdóttir et al.   Frontiers in Genetics

Bile acids and the gut microbiome

(2014) Jason M. Ridlon et al.   CURRENT OPINION IN GASTROENTEROLOGY

The gut microbiota, bacterial metabolites and colorectal cancer

(2014) Petra Louis et al.   NATURE REVIEWS MICROBIOLOGY

Gut microbiota, the pharmabiotics they produce and host health

(2014) Elaine Patterson et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Gut Microbiota-Derived Short-Chain Fatty Acids, T Cells, and Inflammation

(2014) Chang H. Kim et al.   Immune Network

Implication of fermentable carbohydrates targeting the gut microbiota on conjugated linoleic acid production in high-fat-fed mice

(2013) Céline Druart et al.   BRITISH JOURNAL OF NUTRITION

Modulation of the fecal bile acid profile by gut microbiota in cirrhosis

(2013) Genta Kakiyama et al.   JOURNAL OF HEPATOLOGY

Gut solutions to a gut problem: bacteriocins, probiotics and bacteriophage for control of Clostridium difficile infection

(2013) M. C. Rea et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Metaproteomics of our microbiome — Developing insight in function and activity in man and model systems

(2013) Carolin A. Kolmeder et al.   Journal of Proteomics

Vitamin-Mediated Regulation of Intestinal Immunity

(2013) Jun Kunisawa et al.   Frontiers in Immunology

γ-Aminobutyric acid production by culturable bacteria from the human intestine

(2012) E. Barrett et al.   JOURNAL OF APPLIED MICROBIOLOGY

Effect of Lactobacillus salivarius Bacteriocin Abp118 on the Mouse and Pig Intestinal Microbiota

(2012) Eliette Riboulet-Bisson et al.   PLoS One

An iterative workflow for mining the human intestinal metaproteome

(2011) Koos Rooijers et al.   BMC GENOMICS

Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve

(2011) J. A. Bravo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BACTIBASE second release: a database and tool platform for bacteriocin characterization

(2010) Riadh Hammami et al.   BMC MICROBIOLOGY

Gut Microbiota in Health and Disease

(2010) Inna Sekirov et al.   PHYSIOLOGICAL REVIEWS

Specific metabolite production by gut microbiota as a basis for probiotic function

(2009) R.P. Ross et al.   INTERNATIONAL DAIRY JOURNAL

Capacity of Human Nisin- and Pediocin-Producing Lactic Acid Bacteria To Reduce Intestinal Colonization by Vancomycin-Resistant Enterococci

(2008) M. Millette et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY