Comparative network analysis reveals the dynamics of organic acid diversity during fruit ripening in peach (Prunus persica L. Batsch)

Gene expression programs during callus development in tissue culture of two Eucalyptus species

(2022) Ye Zhang et al.   BMC PLANT BIOLOGY

RSNET: inferring gene regulatory networks by a redundancy silencing and network enhancement technique

(2022) Xiaohan Jiang et al.   BMC BIOINFORMATICS

Diversity and Functional Evolution of Terpene Synthases in Rosaceae

(2022) Aidi Zhang et al.   Plants-Basel

The Draft Genome of a Flat Peach (Prunus persica L. cv. ‘124 Pan’) Provides Insights into Its Good Fruit Flavor Traits

(2021) Aidi Zhang et al.   Plants-Basel

Population-scale peach genome analyses unravel selection patterns and biochemical basis underlying fruit flavor

(2021) Yang Yu et al.   Nature Communications

Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

(2021) Tengfei Wang et al.   BMC PLANT BIOLOGY

Functional Analysis Reveals the Regulatory Role of PpTST1 Encoding Tonoplast Sugar Transporter in Sugar Accumulation of Peach Fruit

(2020) Peng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Construction of a high-density SNP-based genetic map and identification of fruit-related QTLs and candidate genes in peach [Prunus persica (L.) Batsch]

(2020) Pei Shi et al.   BMC PLANT BIOLOGY

Scrutinising the relationship between major physiological and compositional changes during ‘Merrill O’Henry’ peach growth with brown rot susceptibility

(2020) Núria Baró-Montel et al.   FOOD SCIENCE AND TECHNOLOGY INTERNATIONAL

Assessment of organic acid accumulation and its related genes in peach

(2020) Beibei Zheng et al.   FOOD CHEMISTRY

Characterization of fruit quality traits for organic acids content and profile in a large peach germplasm collection

(2020) Irina Baccichet et al.   SCIENTIA HORTICULTURAE

Principal component analysis (PCA) of physicochemical compounds’ content in different cultivars of peach fruits, including qualification and quantification of sugars and organic acids by HPLC

(2019) Paulina Nowicka et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Hyperacidification of Citrus fruits by a vacuolar proton-pumping P-ATPase complex

(2019) Pamela Strazzer et al.   Nature Communications

Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes

(2019) Yao-Ming Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits

(2019) Shaogui Guo et al.   NATURE GENETICS

A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits

(2019) Guangwei Zhao et al.   NATURE GENETICS

DNA marker-assisted evaluation of fruit acidity in diverse peach (Prunus persica) germplasm

(2016) Qi Wang et al.   EUPHYTICA

Metabolic profiling of a range of peach fruit varieties reveals high metabolic diversity and commonalities and differences during ripening

(2016) Laura L. Monti et al.   FOOD CHEMISTRY

Dynamic QTLs for sugars and enzyme activities provide an overview of genetic control of sugar metabolism during peach fruit development

(2016) Elsa Desnoues et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Mapping QTLs associated with fruit quality traits in peach [Prunus persica (L.) Batsch] using SNP maps

(2016) José Luis Zeballos et al.   Tree Genetics & Genomes

Genome-wide association study of 12 agronomic traits in peach

(2016) Ke Cao et al.   Nature Communications

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Characterization of 1-aminocyclopropane-1-carboxylic acid synthase (ACS) genes during nectarine fruit development and ripening

(2015) Wenfang Zeng et al.   Tree Genetics & Genomes

Genes Encoding Aluminum-Activated Malate Transporter II and their Association with Fruit Acidity in Apple

(2015) Baiquan Ma et al.   Plant Genome

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

cytoHubba: identifying hub objects and sub-networks from complex interactome

(2014) Chia-Hao Chin et al.   BMC Systems Biology

Conditional mutual inclusive information enables accurate quantification of associations in gene regulatory networks

(2014) Xiujun Zhang et al.   NUCLEIC ACIDS RESEARCH

Fine mapping and identification of a candidate gene for a major locus controlling maturity date in peach

(2013) Raul Pirona et al.   BMC PLANT BIOLOGY

What controls fleshy fruit acidity? A review of malate and citrate accumulation in fruit cells

(2013) A. Etienne et al.   JOURNAL OF EXPERIMENTAL BOTANY

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference

(2012) Xiujun Zhang et al.   BIOINFORMATICS

Studying and modelling dynamic biological processes using time-series gene expression data

(2012) Ziv Bar-Joseph et al.   NATURE REVIEWS GENETICS

Genetic dissection of aroma volatile compounds from the essential oil of peach fruit: QTL analysis and identification of candidate genes using dense SNP maps

(2012) Iban Eduardo et al.   Tree Genetics & Genomes

The peach genome

(2012) Pere Arús et al.   Tree Genetics & Genomes

Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information

(2011) Xiujun Zhang et al.   BIOINFORMATICS

Metabolic Profiling during Peach Fruit Development and Ripening Reveals the Metabolic Networks That Underpin Each Developmental Stage

(2011) V. A. Lombardo et al.   PLANT PHYSIOLOGY

Genetic variation, population structure and linkage disequilibrium in peach commercial varieties

(2010) Maria Aranzana et al.   BMC GENETICS

Manipulating the taste-related composition of strawberry fruits (Fragaria×ananassa) from different cultivars using deficit irrigation

(2010) J. Giné Bordonaba et al.   FOOD CHEMISTRY

Evaluation of the genetic diversity of Asian peach accessions using a selected set of SSR markers

(2010) Rangjin Xie et al.   SCIENTIA HORTICULTURAE

Phenotypic and fine genetic characterization of the D locus controlling fruit acidity in peach

(2009) Karima Boudehri et al.   BMC PLANT BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS