Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information

MISS: a non-linear methodology based on mutual information for genetic association studies in both population and sib-pairs analysis

(2010) Helena Brunel et al.   BIOINFORMATICS

Revealing differences in gene network inference algorithms on the network level by ensemble methods

(2010) Gökmen Altay et al.   BIOINFORMATICS

An integer programming formulation to identify the sparse network architecture governing differentiation of embryonic stem cells

(2010) Ipsita Banerjee et al.   BIOINFORMATICS

Discovery of Chemical Compound Groups with Common Structures by a Network Analysis Approach (Affinity Prediction Method)

(2010) Shigeru Saito et al.   Journal of Chemical Information and Modeling

Model-based method for transcription factor target identification with limited data

(2010) Antti Honkela et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revealing strengths and weaknesses of methods for gene network inference

(2010) D. Marbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GeNGe: systematic generation of gene regulatory networks

(2009) Hendrik Hache et al.   BIOINFORMATICS

A Yeast Synthetic Network for In Vivo Assessment of Reverse-Engineering and Modeling Approaches

(2009) Irene Cantone et al.   CELL

Genome-wide identification of post-translational modulators of transcription factor activity in human B cells

(2009) Kai Wang et al.   NATURE BIOTECHNOLOGY

Model-based redesign of global transcription regulation

(2009) Javier Carrera et al.   NUCLEIC ACIDS RESEARCH

minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information

(2008) Patrick E Meyer et al.   BMC BIOINFORMATICS

Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information

(2008) Weijun Luo et al.   BMC BIOINFORMATICS

Robustification of the PC-Algorithm for Directed Acyclic Graphs

(2008) Markus Kalisch et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS