A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits

Multi-allelic APRR2 Gene is Associated with Fruit Pigment Accumulation in Melon and Watermelon

(2019) Elad Oren et al.   JOURNAL OF EXPERIMENTAL BOTANY

Rewiring of the Fruit Metabolome in Tomato Breeding

(2018) Guangtao Zhu et al.   CELL

Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits

(2018) Xiongming Du et al.   NATURE GENETICS

Deciphering genetic factors that determine melon fruit-quality traits using RNA-Seq-based high-resolution QTL and eQTL mapping

(2018) Navot Galpaz et al.   PLANT JOURNAL

Repeated domestication of melon (Cucumis melo ) in Africa and Asia and a new close relative from India

(2018) Josef Endl et al.   AMERICAN JOURNAL OF BOTANY

QTL mapping of melon fruit quality traits using a high-density GBS-based genetic map

(2018) L. Pereira et al.   BMC PLANT BIOLOGY

A chemical genetic roadmap to improved tomato flavor

(2017) Denise Tieman et al.   SCIENCE

Quantitative trait loci analysis of melon (Cucumis melo L.) domestication-related traits

(2017) Aurora Díaz et al.   THEORETICAL AND APPLIED GENETICS

Xyloglucan endo-transglycosylase/hydrolase (XET/H) gene is expressed during the seed germination in Podophyllum hexandrum: a high altitude Himalayan plant

(2016) Vivek Dogra et al.   PLANTA

Map-based cloning, identification and characterization of the w gene controlling white immature fruit color in cucumber (Cucumis sativus L.)

(2016) Hanqiang Liu et al.   THEORETICAL AND APPLIED GENETICS

Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly

(2015) Jason M Argyris et al.   BMC GENOMICS

Seed size and chloroplast DNA of modern and ancient seeds explain the establishment of Japanese cultivated melon (Cucumis melo L.) by introduction and selection

(2015) Katsunori Tanaka et al.   GENETIC RESOURCES AND CROP EVOLUTION

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

A ‘golden’ SNP inCmOrgoverns the fruit flesh color of melon (Cucumis melo)

(2015) Galil Tzuri et al.   PLANT JOURNAL

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The tetratricopeptide repeat-containing protein slow green1 is required for chloroplast development in Arabidopsis

(2014) Zhihong Hu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

Biosynthesis, regulation, and domestication of bitterness in cucumber

(2014) Y. Shang et al.   SCIENCE

The PH gene determines fruit acidity and contributes to the evolution of sweet melons

(2014) Shahar Cohen et al.   Nature Communications

ReSeqTools: an integrated toolkit for large-scale next-generation sequencing based resequencing analysis

(2013) W. He et al.   GENETICS AND MOLECULAR RESEARCH

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)

(2013) Guanqing Jia et al.   NATURE GENETICS

A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity

(2013) Jianjian Qi et al.   NATURE GENETICS

Network Inference Analysis Identifies an APRR2-Like Gene Linked to Pigment Accumulation in Tomato and Pepper Fruits

(2013) Y. Pan et al.   PLANT PHYSIOLOGY

Expression of FaXTH1 and FaXTH2 genes in strawberry fruit. Cloning of promoter regions and effect of plant growth regulators

(2013) Cristina F. Nardi et al.   SCIENTIA HORTICULTURAE

Medieval emergence of sweet melons, Cucumis melo (Cucurbitaceae)

(2012) Harry S. Paris et al.   ANNALS OF BOTANY

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

The genome of melon (Cucumis melo L.)

(2012) J. Garcia-Mas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two GH3 genes from longan are differentially regulated during fruit growth and development

(2011) Jian-fei Kuang et al.   GENE

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Genetics of Flavonoid, Carotenoid, and Chlorophyll Pigments in Melon Fruit Rinds

(2010) Yaakov Tadmor et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia

(2010) P. Sebastian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

A genetic map of melon highly enriched with fruit quality QTLs and EST markers, including sugar and carotenoid metabolism genes

(2010) R. Harel-Beja et al.   THEORETICAL AND APPLIED GENETICS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

Fleshy Fruit Expansion and Ripening Are Regulated by the Tomato SHATTERPROOF Gene TAGL1

(2009) J. Vrebalov et al.   PLANT CELL

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Chinese melon (Cucumis melo L.) diversity analyses provide strategies for germplasm curation, genetic improvement, and evidentiary support of domestication patterns

(2008) Feishi Luan et al.   EUPHYTICA

A Conserved Mutation in an Ethylene Biosynthesis Enzyme Leads to Andromonoecy in Melons

(2008) A. Boualem et al.   SCIENCE