Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits

Carotenoid Metabolism in Plants: The Role of Plastids

(2018) Tianhu Sun et al.   Molecular Plant

Genetic mapping reveals a candidate gene (ClFS1) for fruit shape in watermelon (Citrullus lanatus L.)

(2018) Junling Dou et al.   THEORETICAL AND APPLIED GENETICS

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

(2018) Chi Zhang et al.   BIOINFORMATICS

Construction of A High-Density Genetic Map and Mapping of Fruit Traits in Watermelon (Citrullus Lanatus L.) Based on Whole-Genome Resequencing

(2018) Bingbing Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops

(2018) Yi Zheng et al.   NUCLEIC ACIDS RESEARCH

Genetic mapping of a major codominant QTL associated with β-carotene accumulation in watermelon

(2017) Sandra Branham et al.   MOLECULAR BREEDING

Evaluation of the Nutritional Quality of Chinese Kale (Brassica alboglabra Bailey) Using UHPLC-Quadrupole-Orbitrap MS/MS-Based Metabolomics

(2017) et al.   MOLECULES

A Tonoplast Sugar Transporter Underlies a Sugar Accumulation QTL in Watermelon

(2017) Yi Ren et al.   PLANT PHYSIOLOGY

Chromosome numbers, Sudanese wild forms, and classification of the watermelon genus Citrullus, with 50 names allocated to seven biological species

(2017) Susanne S. Renner et al.   TAXON

Development of cleaved amplified polymorphic sequence markers and a CAPS-based genetic linkage map in watermelon (Citrullus lanatus [Thunb.] Matsum. and Nakai) constructed using whole-genome re-sequencing data

(2016) Shi Liu et al.   BREEDING SCIENCE

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

High-level expression of a novel chromoplast phosphate transporter ClPHT4;2 is required for flesh color development in watermelon

(2016) Jie Zhang et al.   NEW PHYTOLOGIST

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Efficient CRISPR/Cas9-based gene knockout in watermelon

(2016) Shouwei Tian et al.   PLANT CELL REPORTS

Construction of a genetic linkage map of watermelon (Citrullus lanatus) using CAPS and SSR markers and QTL analysis for fruit quality traits

(2016) Yao Cheng et al.   SCIENTIA HORTICULTURAE

A GBS-SNP-based linkage map and quantitative trait loci (QTL) associated with resistance to Fusarium oxysporum f. sp. niveum race 2 identified in Citrullus lanatus var. citroides

(2016) Sandra E. Branham et al.   THEORETICAL AND APPLIED GENETICS

Rapid and practical molecular marker development for rind traits in watermelon

(2016) Sung-woo Park et al.   Horticulture Environment and Biotechnology

Origin and emergence of the sweet dessert watermelon,Citrullus lanatus

(2015) Harry S. Paris   ANNALS OF BOTANY

Comparative Transcriptome Analysis of Cultivated and Wild Watermelon during Fruit Development

(2015) Shaogui Guo et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Single nucleotide polymorphisms generated by genotyping by sequencing to characterize genome-wide diversity, linkage disequilibrium, and selective sweeps in cultivated watermelon

(2014) Padma Nimmakayala et al.   BMC GENOMICS

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

Watermelon origin solved with molecular phylogenetics including Linnaean material: another example of museomics

(2014) Guillaume Chomicki et al.   NEW PHYTOLOGIST

Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm

(2014) Alexandre Lomsadze et al.   NUCLEIC ACIDS RESEARCH

Reduced chlorophyll biosynthesis in heterozygous barley magnesium chelatase mutants

(2014) Ilka Braumann et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Biosynthesis, regulation, and domestication of bitterness in cucumber

(2014) Y. Shang et al.   SCIENCE

A major QTL associated with Fusarium oxysporum race 1 resistance identified in genetic populations derived from closely related watermelon lines using selective genotyping and genotyping-by-sequencing for SNP discovery

(2014) Shaunese Lambel et al.   THEORETICAL AND APPLIED GENETICS

Cytomolecular characterization of rDNA distribution in various Citrullus species using fluorescent in situ hybridization

(2013) Umesh K. Reddy et al.   GENETIC RESOURCES AND CROP EVOLUTION

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

Localization of a New Gene for Bitterness in Cucumber

(2012) S. Zhang et al.   JOURNAL OF HEREDITY

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

(2012) Shaogui Guo et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Introgression and selection shaping the genome and adaptive loci of weedy rice in northern China

(2012) Jian Sun et al.   NEW PHYTOLOGIST

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Comparative mapping in watermelon [Citrullus lanatus (Thunb.) Matsum. et Nakai]

(2012) Katherine Sandlin et al.   THEORETICAL AND APPLIED GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets

(2011) Miao-Xin Li et al.   HUMAN GENETICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

FaST linear mixed models for genome-wide association studies

(2011) Christoph Lippert et al.   NATURE METHODS

Population differentiation as a test for selective sweeps

(2010) H. Chen et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

(2010) Y. Han et al.   NUCLEIC ACIDS RESEARCH

Divergent metabolome and proteome suggest functional independence of dual phloem transport systems in cucurbits

(2010) B. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

(2009) K. L. McNally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence

(2008) Osamu Gotoh   NUCLEIC ACIDS RESEARCH