The expanded inhibitor of apoptosis gene family in oysters possesses novel domain architectures and may play diverse roles in apoptosis following immune challenge
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Title
The expanded inhibitor of apoptosis gene family in oysters possesses novel domain architectures and may play diverse roles in apoptosis following immune challenge
Authors
Keywords
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Journal
BMC GENOMICS
Volume 23, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-03-12
DOI
10.1186/s12864-021-08233-6
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Note: Only part of the references are listed.- The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia
- (2021) Hao Song et al. BMC BIOLOGY
- Phylogenetic analysis of the caspase family in bivalves: implications for programmed cell death, immune response and development
- (2021) Susanne Vogeler et al. BMC GENOMICS
- A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas
- (2021) Carolina Peñaloza et al. GigaScience
- Genome-wide discovery, and computational and transcriptional characterization of an AIG gene family in the freshwater snail Biomphalaria glabrata, a vector for Schistosoma mansoni
- (2020) Lijun Lu et al. BMC GENOMICS
- Evolutionary and functional analysis of MyD88 genes in pearl oyster Pinctada fucata martensii
- (2020) Yu Jiao et al. FISH & SHELLFISH IMMUNOLOGY
- Chromosome-level analysis of the Crassostrea hongkongensis genome reveals extensive duplication of immune-related genes in bivalves
- (2020) Jinxia Peng et al. Molecular Ecology Resources
- The genome of the softshell clam Mya arenaria and the evolution of apoptosis
- (2020) David Plachetzki et al. Genome Biology and Evolution
- Growth Performance and Transcriptomic Response of Warm-Acclimated Hybrid Abalone Haliotis rufescens (♀) × H. corrugata (♂)
- (2020) M. A. Tripp-Valdez et al. MARINE BIOTECHNOLOGY
- The Multiple Roles of the IAP Super-family in cancer
- (2020) Swati Kumar et al. PHARMACOLOGY & THERAPEUTICS
- Contrasting Immunomodulatory Effects of Probiotic and Pathogenic Bacteria on Eastern Oyster, Crassostrea Virginica, Larvae
- (2020) Tejashree H. Modak et al. Vaccines
- Defining Dermo resistance phenotypes in an eastern oyster breeding population
- (2019) Dina A. Proestou et al. AQUACULTURE RESEARCH
- The molecular machinery of regulated cell death
- (2019) Daolin Tang et al. CELL RESEARCH
- A review on the application of Bacillus as probiotics in aquaculture
- (2019) Felix K.A. Kuebutornye et al. FISH & SHELLFISH IMMUNOLOGY
- Evolution and function analysis of interleukin-17 gene from Pinctada fucata martensii
- (2019) Yanfei Cao et al. FISH & SHELLFISH IMMUNOLOGY
- Survivin at a glance
- (2019) Sally P. Wheatley et al. JOURNAL OF CELL SCIENCE
- Ubiquitin Ligases cIAP1 and cIAP2 Limit Cell Death to Prevent Inflammation
- (2019) Jieqiong Zhang et al. Cell Reports
- Toxoplasma gondii Modulates the Host Cell Responses: An Overview of Apoptosis Pathways
- (2019) Nour Mammari et al. Biomed Research International
- Species-specific mechanisms of cytotoxicity toward immune cells determine the successful outcome ofVibrioinfections
- (2019) Tristan Rubio et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Third BIR domain of XIAP binds to both Cu(II) and Cu(I) in multiple sites and with diverse affinities characterized at atomic resolution
- (2019) Shen-Na Chen et al. Scientific Reports
- Involvement of apoptosis in the dialogue between the parasite Bonamia ostreae and the flat oyster Ostrea edulis
- (2019) Ophélie Gervais et al. FISH & SHELLFISH IMMUNOLOGY
- Extensive Tandem Duplication Events Drive the Expansion of the C1q-Domain-Containing Gene Family in Bivalves
- (2019) Marco Gerdol et al. Marine Drugs
- Massive expansion and diversity of nicotinic acetylcholine receptors in lophotrochozoans
- (2019) Yu Jiao et al. BMC GENOMICS
- TRAF6 suppresses the apoptosis of hemocytes by activating pellino in Crassostrea hongkongensis
- (2019) Yue Lin et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Variation in global transcriptomic response to Perkinsus marinus infection among eastern oyster families highlights potential mechanisms of disease resistance
- (2019) Dina A. Proestou et al. FISH & SHELLFISH IMMUNOLOGY
- The evolution of molluscs
- (2018) Andreas Wanninger et al. BIOLOGICAL REVIEWS
- Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018
- (2018) Lorenzo Galluzzi et al. CELL DEATH AND DIFFERENTIATION
- Genetic and molecular basis of the immune system in the brachiopod Lingula anatina
- (2018) Marco Gerdol et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Genomic analysis of NF-κB signaling pathway reveals its complexity in Crassostrea gigas
- (2018) Mingjia Yu et al. FISH & SHELLFISH IMMUNOLOGY
- The IAP family member BRUCE regulates autophagosome–lysosome fusion
- (2018) Petra Ebner et al. Nature Communications
- OUP accepted manuscript
- (2018) DNA RESEARCH
- Regulation of apoptosis-related genes during interactions between oyster hemocytes and the alveolate parasite Perkinsus marinus
- (2018) Yuk-Ting Lau et al. FISH & SHELLFISH IMMUNOLOGY
- Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences
- (2018) Anqi Zhu et al. BIOINFORMATICS
- Effects of hypoxia-reoxygenation stress on mitochondrial proteome and bioenergetics of the hypoxia-tolerant marine bivalve Crassostrea gigas
- (2018) Eugene P. Sokolov et al. Journal of Proteomics
- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters
- (2018) Julien de Lorgeril et al. Nature Communications
- Molecular effects of a variable environment on Sydney rock oysters, Saccostrea glomerata: Thermal and low salinity stress, and their synergistic effect
- (2018) Nicole G. Ertl et al. Marine Genomics
- The resurrection of the PIDDosome – emerging roles in the DNA-damage response and centrosome surveillance
- (2017) Valentina Sladky et al. JOURNAL OF CELL SCIENCE
- Complex heatmaps reveal patterns and correlations in multidimensional genomic data
- (2016) Zuguang Gu et al. BIOINFORMATICS
- Characterization and functional analysis of two inhibitor of apoptosis genes in Zhikong scallop Chlamys farreri
- (2016) Guoying Miao et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Multi-species protein similarity clustering reveals novel expanded immune gene families in the eastern oyster Crassostrea virginica
- (2016) Ian C. McDowell et al. FISH & SHELLFISH IMMUNOLOGY
- Caspases Connect Cell-Death Signaling to Organismal Homeostasis
- (2016) Lorenzo Galluzzi et al. IMMUNITY
- Controlled detonation: evolution of necroptosis in pathogen defense
- (2016) Michelle Brault et al. IMMUNOLOGY AND CELL BIOLOGY
- Primed for success: Oyster parents treated with poly(I:C) produce offspring with enhanced protection against Ostreid herpesvirus type I infection
- (2016) Timothy J. Green et al. MOLECULAR IMMUNOLOGY
- RaptorX-Property: a web server for protein structure property prediction
- (2016) Sheng Wang et al. NUCLEIC ACIDS RESEARCH
- Infectious diseases of marine molluscs and host responses as revealed by genomic tools
- (2016) Ximing Guo et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The comprehensive immunomodulation of NeurimmiRs in haemocytes of oyster Crassostrea gigas after acetylcholine and norepinephrine stimulation
- (2015) Hao Chen et al. BMC GENOMICS
- IL-17 signaling components in bivalves: Comparative sequence analysis and involvement in the immune responses
- (2015) Umberto Rosani et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Characterization of an inhibitor of apoptosis protein in Crassostrea gigas clarifies its role in apoptosis and immune defense
- (2015) Tao Qu et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Repertoire and evolution of TNF superfamily in Crassostrea gigas: Implications for expansion and diversification of this superfamily in Mollusca
- (2015) Dahai Gao et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Inhibitor of apoptosis proteins as intracellular signaling intermediates
- (2015) Andrew J. Kocab et al. FEBS Journal
- Expression and function analysis of two naturally truncated MyD88 variants in the Pacific oyster Crassostrea gigas
- (2015) Fengjiao Xu et al. FISH & SHELLFISH IMMUNOLOGY
- The complexity of apoptotic cell death in mollusks: An update
- (2015) A. Romero et al. FISH & SHELLFISH IMMUNOLOGY
- An updated molecular basis for mussel immunity
- (2015) Marco Gerdol et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptome analysis reveals strong and complex antiviral response in a mollusc
- (2015) Yan He et al. FISH & SHELLFISH IMMUNOLOGY
- Immune responses to infectious diseases in bivalves
- (2015) Bassem Allam et al. JOURNAL OF INVERTEBRATE PATHOLOGY
- The use of -omic tools in the study of disease processes in marine bivalve mollusks
- (2015) Marta Gómez-Chiarri et al. JOURNAL OF INVERTEBRATE PATHOLOGY
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- IAPs, regulators of innate immunity and inflammation
- (2015) Yann Estornes et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Massive expansion and functional divergence of innate immune genes in a protostome
- (2015) Linlin Zhang et al. Scientific Reports
- The versatile roles of CARDs in regulating apoptosis, inflammation, and NF-κB signaling
- (2014) Wen-Pin Kao et al. APOPTOSIS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Dual transcriptomics of virus-host interactions: comparing two Pacific oyster families presenting contrasted susceptibility to ostreid herpesvirus 1
- (2014) Amélie Segarra et al. BMC GENOMICS
- Dual analysis of host and pathogen transcriptomes in ostreid herpesvirus 1-positiveCrassostrea gigas
- (2014) U. Rosani et al. ENVIRONMENTAL MICROBIOLOGY
- Identification of potential general markers of disease resistance in American oysters, Crassostrea virginica through gene expression studies
- (2014) Chamilani Nikapitiya et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptome of American Oysters, Crassostrea virginica, in Response to Bacterial Challenge: Insights into Potential Mechanisms of Disease Resistance
- (2014) Ian C. McDowell et al. PLoS One
- RCircos: an R package for Circos 2D track plots
- (2013) Hongen Zhang et al. BMC BIOINFORMATICS
- Poly I:C induces a protective antiviral immune response in the Pacific oyster (Crassostrea gigas) against subsequent challenge with Ostreid herpesvirus (OsHV-1 μvar)
- (2013) Timothy J. Green et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptome Analysis Reveals a Rich Gene Set Related to Innate Immunity in the Eastern Oyster (Crassostrea virginica)
- (2013) Linlin Zhang et al. MARINE BIOTECHNOLOGY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Genes of the Mitochondrial Apoptotic Pathway in Mytilus galloprovincialis
- (2013) Noelia Estévez-Calvar et al. PLoS One
- Evolution of the Animal Apoptosis Network
- (2013) C. M. Zmasek et al. Cold Spring Harbor Perspectives in Biology
- IAPs on the move: role of inhibitors of apoptosis proteins in cell migration
- (2013) T K Oberoi-Khanuja et al. Cell Death & Disease
- Unipro UGENE: a unified bioinformatics toolkit
- (2012) Konstantin Okonechnikov et al. BIOINFORMATICS
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Sequence variability of fibrinogen-related proteins (FREPs) in Crassostrea gigas
- (2012) LinLin Zhang et al. CHINESE SCIENCE BULLETIN
- Role of Melanoma Inhibitor of Apoptosis (ML-IAP) Protein, a Member of the Baculoviral IAP Repeat (BIR) Domain Family, in the Regulation of C-RAF Kinase and Cell Migration
- (2012) Tripat Kaur Oberoi-Khanuja et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Dynamic Evolution of Toll-Like Receptor Multigene Families in Echinoderms
- (2012) Katherine M. Buckley et al. Frontiers in Immunology
- Gene discovery, comparative analysis and expression profile reveal the complexity of the Crassostrea gigas apoptosis system
- (2011) Linlin Zhang et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- The C1q domain containing proteins of the Mediterranean mussel Mytilus galloprovincialis: A widespread and diverse family of immune-related molecules
- (2011) Marco Gerdol et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- CARD-Mediated Autoinhibition of cIAP1's E3 Ligase Activity Suppresses Cell Proliferation and Migration
- (2011) Juanita Lopez et al. MOLECULAR CELL
- Whole Transcriptome Profiling of Successful Immune Response to Vibrio Infections in the Oyster Crassostrea gigas by Digital Gene Expression Analysis
- (2011) Julien de Lorgeril et al. PLoS One
- Apoptosis and its functional significance in molluscs
- (2010) Tibor Kiss APOPTOSIS
- Hidden Markov model speed heuristic and iterative HMM search procedure
- (2010) L Steven Johnson et al. BMC BIOINFORMATICS
- Apoptosis as a host defense mechanism in Crassostrea virginica and its modulation by Perkinsus marinus
- (2010) Francis M. Hughes et al. FISH & SHELLFISH IMMUNOLOGY
- Domain architecture evolution of pattern-recognition receptors
- (2010) Qing Zhang et al. IMMUNOGENETICS
- The life and death of gene families
- (2009) Jeffery P. Demuth et al. BIOESSAYS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Evolution and Function of Innate Immune Receptors – Insights from Marine Invertebrates
- (2009) Philip Rosenstiel et al. Journal of Innate Immunity
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- The mechanism of peptide-binding specificity of IAP BIR domains
- (2008) B P Eckelman et al. CELL DEATH AND DIFFERENTIATION
- Inhibitor of Apoptosis Proteins in Eukaryotic Evolution and Development: A Model of Thematic Conservation
- (2008) Mary X.D. O'Riordan et al. DEVELOPMENTAL CELL
- Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity
- (2008) S. Huang et al. GENOME RESEARCH
- IAPs contain an evolutionarily conserved ubiquitin-binding domain that regulates NF-κB as well as cell survival and oncogenesis
- (2008) Mads Gyrd-Hansen et al. NATURE CELL BIOLOGY
- RNA-based gene duplication: mechanistic and evolutionary insights
- (2008) Henrik Kaessmann et al. NATURE REVIEWS GENETICS
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
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