Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters

Identification of a newly described OsHV-1 µvar from the North Adriatic Sea (Italy)

(2018) Miriam Abbadi et al.   JOURNAL OF GENERAL VIROLOGY

Exposing the diversity of multiple infection patterns

(2017) Mircea T. Sofonea et al.   JOURNAL OF THEORETICAL BIOLOGY

Haemocytes collected from experimentally infected Pacific oysters, Crassostrea gigas: Detection of ostreid herpesvirus 1 DNA, RNA, and proteins in relation with inhibition of apoptosis

(2017) Claire Martenot et al.   PLoS One

Complete genome sequence of Ostreid herpesvirus type 1 µVar isolated during mortality events in the Pacific oyster Crassostrea gigas in France and Ireland

(2017) E.A.V. Burioli et al.   VIROLOGY

Stochastic variation in the initial phase of bacterial infection predicts the probability of survival in D. melanogaster

(2017) David Duneau et al.   eLife

Long-lasting antiviral innate immune priming in the Lophotrochozoan Pacific oyster, Crassostrea gigas

(2017) Maxime Lafont et al.   Scientific Reports

In situ hybridization and histopathological observations during ostreid herpesvirus-1-associated mortalities in Pacific oysters Crassostrea gigas

(2016) R Bueno et al.   DISEASES OF AQUATIC ORGANISMS

The role of tissue-specific microbiota in initial establishment success of Pacific oysters

(2016) Ana Lokmer et al.   ENVIRONMENTAL MICROBIOLOGY

Vibrio crassostreae, a benign oyster colonizer turned into a pathogen after plasmid acquisition

(2016) Maxime Bruto et al.   ISME Journal

Infectious diseases of marine molluscs and host responses as revealed by genomic tools

(2016) Ximing Guo et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Diagnosis of vibriosis in the era of genomics: lessons from invertebrates

(2016) F. LE ROUX   REVUE SCIENTIFIQUE ET TECHNIQUE-OFFICE INTERNATIONAL DES EPIZOOTIES

Oysters and Vibrios as a Model for Disease Dynamics in Wild Animals

(2016) Frédérique Le Roux et al.   TRENDS IN MICROBIOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Mass selection for survival and resistance to OsHV-1 infection in Crassostrea gigas spat in field conditions: response to selection after four generations

(2015) Lionel Dégremont et al.   AQUACULTURE

The new insights into the oyster antimicrobial defense: Cellular, molecular and genetic view

(2015) Evelyne Bachère et al.   FISH & SHELLFISH IMMUNOLOGY

OsHV-1 countermeasures to the Pacific oyster's anti-viral response

(2015) Timothy J. Green et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome analysis reveals strong and complex antiviral response in a mollusc

(2015) Yan He et al.   FISH & SHELLFISH IMMUNOLOGY

Mass mortality in bivalves and the intricate case of the Pacific oyster, Crassostrea gigas

(2015) Valérie Barbosa Solomieu et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Adaptation to enemy shifts: rapid resistance evolution to local Vibrio spp. in invasive Pacific oysters

(2015) C. C. Wendling et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bee declines driven by combined stress from parasites, pesticides, and lack of flowers

(2015) D. Goulson et al.   SCIENCE

Crassostrea gigas mortality in France: the usual suspect, a herpes virus, may not be the killer in this polymicrobial opportunistic disease

(2015) Bruno Petton et al.   Frontiers in Microbiology

Ostreid Herpesvirus 1 Infection among Pacific Oyster (Crassostrea gigas) Spat: Relevance of Water Temperature to Virus Replication and Circulation Prior to the Onset of Mortality

(2014) Tristan Renault et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Hemolymph microbiome of Pacific oysters in response to temperature, temperature stress and infection

(2014) Ana Lokmer et al.   ISME Journal

Populations, not clones, are the unit of vibrio pathogenesis in naturally infected oysters

(2014) Astrid Lemire et al.   ISME Journal

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Vibrio diversity and dynamics in the Monterey Bay upwelling region

(2014) Sarah Mansergh et al.   Frontiers in Microbiology

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Influence of husbandry practices on OsHV-1 associated mortality of Pacific oysters Crassostrea gigas

(2013) Ika Paul-Pont et al.   AQUACULTURE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Temperature influence on pathogen transmission and subsequent mortalities in juvenile Pacific oysters Crassostrea gigas

(2013) B Petton et al.   Aquaculture Environment Interactions

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Analysis of Clinical Ostreid Herpesvirus 1 (Malacoherpesviridae) Specimens by Sequencing Amplified Fragments from Three Virus Genome Areas

(2012) T. Renault et al.   JOURNAL OF VIROLOGY

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

A previously undescribed ostreid herpes virus 1 (OsHV-1) genotype detected in the pacific oyster, Crassostrea gigas, in Ireland

(2012) S. A. LYNCH et al.   PARASITOLOGY

Investigation of mortality in Pacific oysters associated with Ostreid herpesvirus-1μVar in the Republic of Ireland in 2009

(2012) Edmund J. Peeler et al.   PREVENTIVE VETERINARY MEDICINE

Mass mortalities of Pacific oysters Crassostrea gigas reflect infectious diseases and vary with farming practices in the Mediterranean Thau lagoon, France

(2012) F Pernet et al.   Aquaculture Environment Interactions

The Antimicrobial Defense of the Pacific Oyster, Crassostrea gigas. How Diversity may Compensate for Scarcity in the Regulation of Resident/Pathogenic Microflora

(2012) Paulina Schmitt et al.   Frontiers in Microbiology

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Detection of different variants of Ostreid Herpesvirus 1 in the Pacific oyster, Crassostrea gigas between 2008 and 2010

(2011) Claire Martenot et al.   VIRUS RESEARCH

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Epidemiological and clinical consequences of within-host evolution

(2010) Samuel Alizon et al.   TRENDS IN MICROBIOLOGY

Detection and description of a particular Ostreid herpesvirus 1 genotype associated with massive mortality outbreaks of Pacific oysters, Crassostrea gigas, in France in 2008

(2010) Amélie Segarra et al.   VIRUS RESEARCH

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Anesthesia in Pacific oyster,Crassostrea gigas

(2009) Marc Suquet et al.   AQUATIC LIVING RESOURCES

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Microbial disease and the coral holobiont

(2009) David G. Bourne et al.   TRENDS IN MICROBIOLOGY

Influence of food density and temperature on ingestion, growth and settlement of Pacific oyster larvae, Crassostrea gigas

(2008) B. Rico-Villa et al.   AQUACULTURE