The expanded inhibitor of apoptosis gene family in oysters possesses novel domain architectures and may play diverse roles in apoptosis following immune challenge
出版年份 2022 全文链接
标题
The expanded inhibitor of apoptosis gene family in oysters possesses novel domain architectures and may play diverse roles in apoptosis following immune challenge
作者
关键词
-
出版物
BMC GENOMICS
Volume 23, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2022-03-12
DOI
10.1186/s12864-021-08233-6
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia
- (2021) Hao Song et al. BMC BIOLOGY
- Phylogenetic analysis of the caspase family in bivalves: implications for programmed cell death, immune response and development
- (2021) Susanne Vogeler et al. BMC GENOMICS
- A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas
- (2021) Carolina Peñaloza et al. GigaScience
- Genome-wide discovery, and computational and transcriptional characterization of an AIG gene family in the freshwater snail Biomphalaria glabrata, a vector for Schistosoma mansoni
- (2020) Lijun Lu et al. BMC GENOMICS
- Evolutionary and functional analysis of MyD88 genes in pearl oyster Pinctada fucata martensii
- (2020) Yu Jiao et al. FISH & SHELLFISH IMMUNOLOGY
- Chromosome-level analysis of the Crassostrea hongkongensis genome reveals extensive duplication of immune-related genes in bivalves
- (2020) Jinxia Peng et al. Molecular Ecology Resources
- The genome of the softshell clam Mya arenaria and the evolution of apoptosis
- (2020) David Plachetzki et al. Genome Biology and Evolution
- Growth Performance and Transcriptomic Response of Warm-Acclimated Hybrid Abalone Haliotis rufescens (♀) × H. corrugata (♂)
- (2020) M. A. Tripp-Valdez et al. MARINE BIOTECHNOLOGY
- The Multiple Roles of the IAP Super-family in cancer
- (2020) Swati Kumar et al. PHARMACOLOGY & THERAPEUTICS
- Contrasting Immunomodulatory Effects of Probiotic and Pathogenic Bacteria on Eastern Oyster, Crassostrea Virginica, Larvae
- (2020) Tejashree H. Modak et al. Vaccines
- Defining Dermo resistance phenotypes in an eastern oyster breeding population
- (2019) Dina A. Proestou et al. AQUACULTURE RESEARCH
- The molecular machinery of regulated cell death
- (2019) Daolin Tang et al. CELL RESEARCH
- A review on the application of Bacillus as probiotics in aquaculture
- (2019) Felix K.A. Kuebutornye et al. FISH & SHELLFISH IMMUNOLOGY
- Evolution and function analysis of interleukin-17 gene from Pinctada fucata martensii
- (2019) Yanfei Cao et al. FISH & SHELLFISH IMMUNOLOGY
- Survivin at a glance
- (2019) Sally P. Wheatley et al. JOURNAL OF CELL SCIENCE
- Ubiquitin Ligases cIAP1 and cIAP2 Limit Cell Death to Prevent Inflammation
- (2019) Jieqiong Zhang et al. Cell Reports
- Toxoplasma gondii Modulates the Host Cell Responses: An Overview of Apoptosis Pathways
- (2019) Nour Mammari et al. Biomed Research International
- Species-specific mechanisms of cytotoxicity toward immune cells determine the successful outcome ofVibrioinfections
- (2019) Tristan Rubio et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Third BIR domain of XIAP binds to both Cu(II) and Cu(I) in multiple sites and with diverse affinities characterized at atomic resolution
- (2019) Shen-Na Chen et al. Scientific Reports
- Involvement of apoptosis in the dialogue between the parasite Bonamia ostreae and the flat oyster Ostrea edulis
- (2019) Ophélie Gervais et al. FISH & SHELLFISH IMMUNOLOGY
- Extensive Tandem Duplication Events Drive the Expansion of the C1q-Domain-Containing Gene Family in Bivalves
- (2019) Marco Gerdol et al. Marine Drugs
- Massive expansion and diversity of nicotinic acetylcholine receptors in lophotrochozoans
- (2019) Yu Jiao et al. BMC GENOMICS
- TRAF6 suppresses the apoptosis of hemocytes by activating pellino in Crassostrea hongkongensis
- (2019) Yue Lin et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Variation in global transcriptomic response to Perkinsus marinus infection among eastern oyster families highlights potential mechanisms of disease resistance
- (2019) Dina A. Proestou et al. FISH & SHELLFISH IMMUNOLOGY
- The evolution of molluscs
- (2018) Andreas Wanninger et al. BIOLOGICAL REVIEWS
- Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018
- (2018) Lorenzo Galluzzi et al. CELL DEATH AND DIFFERENTIATION
- Genetic and molecular basis of the immune system in the brachiopod Lingula anatina
- (2018) Marco Gerdol et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Genomic analysis of NF-κB signaling pathway reveals its complexity in Crassostrea gigas
- (2018) Mingjia Yu et al. FISH & SHELLFISH IMMUNOLOGY
- The IAP family member BRUCE regulates autophagosome–lysosome fusion
- (2018) Petra Ebner et al. Nature Communications
- OUP accepted manuscript
- (2018) DNA RESEARCH
- Regulation of apoptosis-related genes during interactions between oyster hemocytes and the alveolate parasite Perkinsus marinus
- (2018) Yuk-Ting Lau et al. FISH & SHELLFISH IMMUNOLOGY
- Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences
- (2018) Anqi Zhu et al. BIOINFORMATICS
- Effects of hypoxia-reoxygenation stress on mitochondrial proteome and bioenergetics of the hypoxia-tolerant marine bivalve Crassostrea gigas
- (2018) Eugene P. Sokolov et al. Journal of Proteomics
- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters
- (2018) Julien de Lorgeril et al. Nature Communications
- Molecular effects of a variable environment on Sydney rock oysters, Saccostrea glomerata: Thermal and low salinity stress, and their synergistic effect
- (2018) Nicole G. Ertl et al. Marine Genomics
- The resurrection of the PIDDosome – emerging roles in the DNA-damage response and centrosome surveillance
- (2017) Valentina Sladky et al. JOURNAL OF CELL SCIENCE
- Complex heatmaps reveal patterns and correlations in multidimensional genomic data
- (2016) Zuguang Gu et al. BIOINFORMATICS
- Characterization and functional analysis of two inhibitor of apoptosis genes in Zhikong scallop Chlamys farreri
- (2016) Guoying Miao et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Multi-species protein similarity clustering reveals novel expanded immune gene families in the eastern oyster Crassostrea virginica
- (2016) Ian C. McDowell et al. FISH & SHELLFISH IMMUNOLOGY
- Caspases Connect Cell-Death Signaling to Organismal Homeostasis
- (2016) Lorenzo Galluzzi et al. IMMUNITY
- Controlled detonation: evolution of necroptosis in pathogen defense
- (2016) Michelle Brault et al. IMMUNOLOGY AND CELL BIOLOGY
- Primed for success: Oyster parents treated with poly(I:C) produce offspring with enhanced protection against Ostreid herpesvirus type I infection
- (2016) Timothy J. Green et al. MOLECULAR IMMUNOLOGY
- RaptorX-Property: a web server for protein structure property prediction
- (2016) Sheng Wang et al. NUCLEIC ACIDS RESEARCH
- Infectious diseases of marine molluscs and host responses as revealed by genomic tools
- (2016) Ximing Guo et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The comprehensive immunomodulation of NeurimmiRs in haemocytes of oyster Crassostrea gigas after acetylcholine and norepinephrine stimulation
- (2015) Hao Chen et al. BMC GENOMICS
- IL-17 signaling components in bivalves: Comparative sequence analysis and involvement in the immune responses
- (2015) Umberto Rosani et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Characterization of an inhibitor of apoptosis protein in Crassostrea gigas clarifies its role in apoptosis and immune defense
- (2015) Tao Qu et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Repertoire and evolution of TNF superfamily in Crassostrea gigas: Implications for expansion and diversification of this superfamily in Mollusca
- (2015) Dahai Gao et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Inhibitor of apoptosis proteins as intracellular signaling intermediates
- (2015) Andrew J. Kocab et al. FEBS Journal
- Expression and function analysis of two naturally truncated MyD88 variants in the Pacific oyster Crassostrea gigas
- (2015) Fengjiao Xu et al. FISH & SHELLFISH IMMUNOLOGY
- The complexity of apoptotic cell death in mollusks: An update
- (2015) A. Romero et al. FISH & SHELLFISH IMMUNOLOGY
- An updated molecular basis for mussel immunity
- (2015) Marco Gerdol et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptome analysis reveals strong and complex antiviral response in a mollusc
- (2015) Yan He et al. FISH & SHELLFISH IMMUNOLOGY
- Immune responses to infectious diseases in bivalves
- (2015) Bassem Allam et al. JOURNAL OF INVERTEBRATE PATHOLOGY
- The use of -omic tools in the study of disease processes in marine bivalve mollusks
- (2015) Marta Gómez-Chiarri et al. JOURNAL OF INVERTEBRATE PATHOLOGY
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- IAPs, regulators of innate immunity and inflammation
- (2015) Yann Estornes et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Massive expansion and functional divergence of innate immune genes in a protostome
- (2015) Linlin Zhang et al. Scientific Reports
- The versatile roles of CARDs in regulating apoptosis, inflammation, and NF-κB signaling
- (2014) Wen-Pin Kao et al. APOPTOSIS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Dual transcriptomics of virus-host interactions: comparing two Pacific oyster families presenting contrasted susceptibility to ostreid herpesvirus 1
- (2014) Amélie Segarra et al. BMC GENOMICS
- Dual analysis of host and pathogen transcriptomes in ostreid herpesvirus 1-positiveCrassostrea gigas
- (2014) U. Rosani et al. ENVIRONMENTAL MICROBIOLOGY
- Identification of potential general markers of disease resistance in American oysters, Crassostrea virginica through gene expression studies
- (2014) Chamilani Nikapitiya et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptome of American Oysters, Crassostrea virginica, in Response to Bacterial Challenge: Insights into Potential Mechanisms of Disease Resistance
- (2014) Ian C. McDowell et al. PLoS One
- RCircos: an R package for Circos 2D track plots
- (2013) Hongen Zhang et al. BMC BIOINFORMATICS
- Poly I:C induces a protective antiviral immune response in the Pacific oyster (Crassostrea gigas) against subsequent challenge with Ostreid herpesvirus (OsHV-1 μvar)
- (2013) Timothy J. Green et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptome Analysis Reveals a Rich Gene Set Related to Innate Immunity in the Eastern Oyster (Crassostrea virginica)
- (2013) Linlin Zhang et al. MARINE BIOTECHNOLOGY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Genes of the Mitochondrial Apoptotic Pathway in Mytilus galloprovincialis
- (2013) Noelia Estévez-Calvar et al. PLoS One
- Evolution of the Animal Apoptosis Network
- (2013) C. M. Zmasek et al. Cold Spring Harbor Perspectives in Biology
- IAPs on the move: role of inhibitors of apoptosis proteins in cell migration
- (2013) T K Oberoi-Khanuja et al. Cell Death & Disease
- Unipro UGENE: a unified bioinformatics toolkit
- (2012) Konstantin Okonechnikov et al. BIOINFORMATICS
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Sequence variability of fibrinogen-related proteins (FREPs) in Crassostrea gigas
- (2012) LinLin Zhang et al. CHINESE SCIENCE BULLETIN
- Role of Melanoma Inhibitor of Apoptosis (ML-IAP) Protein, a Member of the Baculoviral IAP Repeat (BIR) Domain Family, in the Regulation of C-RAF Kinase and Cell Migration
- (2012) Tripat Kaur Oberoi-Khanuja et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Dynamic Evolution of Toll-Like Receptor Multigene Families in Echinoderms
- (2012) Katherine M. Buckley et al. Frontiers in Immunology
- Gene discovery, comparative analysis and expression profile reveal the complexity of the Crassostrea gigas apoptosis system
- (2011) Linlin Zhang et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- The C1q domain containing proteins of the Mediterranean mussel Mytilus galloprovincialis: A widespread and diverse family of immune-related molecules
- (2011) Marco Gerdol et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- CARD-Mediated Autoinhibition of cIAP1's E3 Ligase Activity Suppresses Cell Proliferation and Migration
- (2011) Juanita Lopez et al. MOLECULAR CELL
- Whole Transcriptome Profiling of Successful Immune Response to Vibrio Infections in the Oyster Crassostrea gigas by Digital Gene Expression Analysis
- (2011) Julien de Lorgeril et al. PLoS One
- Apoptosis and its functional significance in molluscs
- (2010) Tibor Kiss APOPTOSIS
- Hidden Markov model speed heuristic and iterative HMM search procedure
- (2010) L Steven Johnson et al. BMC BIOINFORMATICS
- Apoptosis as a host defense mechanism in Crassostrea virginica and its modulation by Perkinsus marinus
- (2010) Francis M. Hughes et al. FISH & SHELLFISH IMMUNOLOGY
- Domain architecture evolution of pattern-recognition receptors
- (2010) Qing Zhang et al. IMMUNOGENETICS
- The life and death of gene families
- (2009) Jeffery P. Demuth et al. BIOESSAYS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Evolution and Function of Innate Immune Receptors – Insights from Marine Invertebrates
- (2009) Philip Rosenstiel et al. Journal of Innate Immunity
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- The mechanism of peptide-binding specificity of IAP BIR domains
- (2008) B P Eckelman et al. CELL DEATH AND DIFFERENTIATION
- Inhibitor of Apoptosis Proteins in Eukaryotic Evolution and Development: A Model of Thematic Conservation
- (2008) Mary X.D. O'Riordan et al. DEVELOPMENTAL CELL
- Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity
- (2008) S. Huang et al. GENOME RESEARCH
- IAPs contain an evolutionarily conserved ubiquitin-binding domain that regulates NF-κB as well as cell survival and oncogenesis
- (2008) Mads Gyrd-Hansen et al. NATURE CELL BIOLOGY
- RNA-based gene duplication: mechanistic and evolutionary insights
- (2008) Henrik Kaessmann et al. NATURE REVIEWS GENETICS
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started