The role of microbiota in respiratory health and diseases, particularly in tuberculosis

Gastrointestinal microbiota composition predicts peripheral inflammatory state during treatment of human tuberculosis

(2021) Matthew F. Wipperman et al.   Nature Communications

Microbiome-immune interactions in tuberculosis

(2021) Giorgia Mori et al.   PLoS Pathogens

The Intestinal Microbiota: Impacts of Antibiotics Therapy, Colonization Resistance, and Diseases

(2021) Taif Shah et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Role of Lung and Gut Microbiota in the Pathology of Asthma

(2020) Weronika Barcik et al.   IMMUNITY

Early dynamics of innate immunity during pulmonary tuberculosis

(2020) Björn Corleis et al.   IMMUNOLOGY LETTERS

Epithelial Toll-like receptors and their role in gut homeostasis and disease

(2020) Juan F. Burgueño et al.   Nature Reviews Gastroenterology & Hepatology

Respiratory mycobiome and suggestion of inter-kingdom network during acute pulmonary exacerbation in cystic fibrosis

(2020) Perrine Soret et al.   Scientific Reports

An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome

(2020) Till R. Lesker et al.   Cell Reports

Identification of scavenger receptor B1 as the airway microfold cell receptor for Mycobacterium tuberculosis

(2020) Haaris S Khan et al.   eLife

The Gut-Lung Axis in Health and Respiratory Diseases: A Place for Inter-Organ and Inter-Kingdom Crosstalks

(2020) Raphaël Enaud et al.   Frontiers in Cellular and Infection Microbiology

Long-Term Effects of Multi-Drug-Resistant Tuberculosis Treatment on Gut Microbiota and Its Health Consequences

(2020) Jinyu Wang et al.   Frontiers in Microbiology

Thinking Outside the Box: Innate- and B Cell-Memory Responses as Novel Protective Mechanisms Against Tuberculosis

(2020) José Alberto Choreño-Parra et al.   Frontiers in Immunology

Metagenomic Characterization of the Respiratory Microbiome: A Pièce de Résistance

(2020) Andrew I Ritchie et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Innate lymphoid cells control signaling circuits to regulate tissue-specific immunity

(2020) Christoph S. N. Klose et al.   CELL RESEARCH

Peripheral Blood Mucosal-Associated Invariant T Cells in Tuberculosis Patients and Healthy Mycobacterium tuberculosis-Exposed Controls

(2020) Sara Suliman et al.   JOURNAL OF INFECTIOUS DISEASES

Lactobacillus reuteri attenuated allergic inflammation induced by HDM in the mouse and modulated gut microbes

(2020) Lingzhi Li et al.   PLoS One

Distinct Human NK Cell Phenotypes and Functional Responses to Mycobacterium tuberculosis in Adults From TB Endemic and Non-endemic Regions

(2020) Levelle D. Harris et al.   Frontiers in Cellular and Infection Microbiology

The Activation of Mucosal-Associated Invariant T (MAIT) Cells Is Affected by Microbial Diversity and Riboflavin Utilization in vitro

(2020) Jannike L. Krause et al.   Frontiers in Microbiology

Manipulation of epithelial integrity and mucosal immunity by host and microbiota‐derived metabolites

(2020) Hisako Kayama et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Mucosal or systemic microbiota exposures shape the B cell repertoire

(2020) Hai Li et al.   NATURE

The Relationship Between Gut Microbiota and Inflammatory Diseases: The Role of Macrophages

(2020) Ji Wang et al.   Frontiers in Microbiology

Microbial Stimulation Reverses the Age-Related Decline in M Cells in Aged Mice

(2020) David S. Donaldson et al.   iScience

MAIT cell-directed therapy of Mycobacterium tuberculosis infection

(2020) Shunsuke Sakai et al.   Mucosal Immunology

Antigen Recognition by MR1-Reactive T Cells; MAIT Cells, Metabolites, and Remaining Mysteries

(2020) Alexandra J. Corbett et al.   Frontiers in Immunology

Commentary: Group 3 innate lymphoid cells mediate early protective immunity against tuberculosis

(2020) Boning Zeng et al.   Frontiers in Immunology

Upper Respiratory Tract Microbiome and Otitis Media Intertalk: Lessons from the Literature

(2020) Francesco Folino et al.   Journal of Clinical Medicine

The immune landscape in tuberculosis reveals populations linked to disease and latency

(2020) Ekaterina Esaulova et al.   Cell Host & Microbe

Antibiotics as Major Disruptors of Gut Microbiota

(2020) Jaime Ramirez et al.   Frontiers in Cellular and Infection Microbiology

Interleukin (IL)-12 and IL-18 Synergize to Promote MAIT Cell IL-17A and IL-17F Production Independently of IL-23 Signaling

(2020) Suzanne Cole et al.   Frontiers in Immunology

Systemic proinflammation after Mycobacterium tuberculosis infection was correlated to the gut microbiome in HIV-uninfected humans

(2019) Shiang-Fen Huang et al.   EUROPEAN JOURNAL OF CLINICAL INVESTIGATION

A review of 10 years of human microbiome research activities at the US National Institutes of Health, Fiscal Years 2007-2016

(2019)   Microbiome

Intestinal dysbiosis compromises alveolar macrophage immunity to Mycobacterium tuberculosis

(2019) Nargis Khan et al.   Mucosal Immunology

The Integrative Human Microbiome Project

(2019)   NATURE

The Gut Microbiome Signatures Discriminate Healthy From Pulmonary Tuberculosis Patients

(2019) Yongfei Hu et al.   Frontiers in Cellular and Infection Microbiology

Functional effects of the microbiota in chronic respiratory disease

(2019) Kurtis F Budden et al.   Lancet Respiratory Medicine

Group 3 innate lymphoid cells mediate early protective immunity against tuberculosis

(2019) Amanda Ardain et al.   NATURE

Microbiota-derived acetate protects against respiratory syncytial virus infection through a GPR43-type 1 interferon response

(2019) Krist Helen Antunes et al.   Nature Communications

Natural Killer Cells in the Lungs

(2019) Jingjing Cong et al.   Frontiers in Immunology

Immunology of Mycobacterium tuberculosis Infections

(2019) Jonathan Kevin Sia et al.   Microbiology Spectrum

The influence of the microbiome on respiratory health

(2019) Tomasz P. Wypych et al.   NATURE IMMUNOLOGY

The biology and functional importance of MAIT cells

(2019) Dale I. Godfrey et al.   NATURE IMMUNOLOGY

Microbial metabolites control the thymic development of mucosal-associated invariant T cells

(2019) François Legoux et al.   SCIENCE

Inhaled corticosteroid suppression of cathelicidin drives dysbiosis and bacterial infection in chronic obstructive pulmonary disease

(2019) Aran Singanayagam et al.   Science Translational Medicine

Mycobacterium tuberculosis Primary Infection and Dissemination: A Critical Role for Alveolar Epithelial Cells

(2019) Michelle B. Ryndak et al.   Frontiers in Cellular and Infection Microbiology

Metabolite-Sensing Receptor Ffar2 Regulates Colonic Group 3 Innate Lymphoid Cells and Gut Immunity

(2019) Eunyoung Chun et al.   IMMUNITY

MAIT cells are imprinted by the microbiota in early life and promote tissue repair

(2019) Michael G. Constantinides et al.   SCIENCE

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

(2019) Jethro S. Johnson et al.   Nature Communications

Gut Microbiota and Obesity: A Role for Probiotics

(2019) Ludovico Abenavoli et al.   Nutrients

Alveolar microbiota profile in patients with human pulmonary tuberculosis and interstitial pneumonia

(2019) Joel Armando Vázquez-Pérez et al.   MICROBIAL PATHOGENESIS

The role of gut microbiota in atopic asthma and allergy, implications in the understanding of disease pathogenesis

(2019) Mohammad Salameh et al.   SCANDINAVIAN JOURNAL OF IMMUNOLOGY

Lactobacilli intra-tracheal administration protects from Pseudomonas aeruginosa pulmonary infection in mice – a proof of concept

(2019) M.S. Fangous et al.   Beneficial Microbes

WHO global progress report on tuberculosis elimination

(2019) Emilia Harding   Lancet Respiratory Medicine

Indole Propionic Acid: a Small Molecule Links between Gut Microbiota and Tuberculosis

(2018) Stefan H. E. Kaufmann   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Updates on antibody functions in Mycobacterium tuberculosis infection and their relevance for developing a vaccine against tuberculosis

(2018) Jacqueline M Achkar et al.   CURRENT OPINION IN IMMUNOLOGY

Dietary Fiber Confers Protection against Flu by Shaping Ly6c − Patrolling Monocyte Hematopoiesis and CD8 + T Cell Metabolism

(2018) Aurélien Trompette et al.   IMMUNITY

BCG vaccination drives accumulation and effector function of innate lymphoid cells in murine lungs

(2018) Pia Steigler et al.   IMMUNOLOGY AND CELL BIOLOGY

Antibiotic treatment–induced secondary IgA deficiency enhances susceptibility to Pseudomonas aeruginosa pneumonia

(2018) Oliver H. Robak et al.   JOURNAL OF CLINICAL INVESTIGATION

Modulation of bacterial metabolism by the microenvironment controls MAIT cell stimulation

(2018) Mathias Schmaler et al.   Mucosal Immunology

Culturing the human microbiota and culturomics

(2018) Jean-Christophe Lagier et al.   NATURE REVIEWS MICROBIOLOGY

Meta-analysis of the lung microbiota in pulmonary tuberculosis

(2018) Bo-young Hong et al.   TUBERCULOSIS

Tuberculosis and the art of macrophage manipulation

(2018) S Upadhyay et al.   Pathogens and Disease

Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for Clostridioides difficile infection

(2018) Jillian R.-M. Brown et al.   BMC GASTROENTEROLOGY

Innate Lymphoid Cells: 10 Years On

(2018) Eric Vivier et al.   CELL

Alveolar Macrophages Provide an Early Mycobacterium tuberculosis Niche and Initiate Dissemination

(2018) Sara B. Cohen et al.   Cell Host & Microbe

Dynamic balance of pro- and anti-inflammatory signals controls disease and limits pathology

(2018) Joseph M. Cicchese et al.   IMMUNOLOGICAL REVIEWS

Limited pulmonary mucosal-associated invariant T cell accumulation and activation during Mycobacterium tuberculosis infection in rhesus macaques

(2018) Keith D. Kauffman et al.   INFECTION AND IMMUNITY

Gut microbiota associated with pulmonary tuberculosis and dysbiosis caused by anti-tuberculosis drugs

(2018) Yongfeng Hu et al.   JOURNAL OF INFECTION

Extensive impact of non-antibiotic drugs on human gut bacteria

(2018) Lisa Maier et al.   NATURE

A multi-cohort study of the immune factors associated with M. tuberculosis infection outcomes

(2018) Roshni Roy Chowdhury et al.   NATURE

The Microbiome and Tuberculosis: Early Evidence for Cross Talk

(2018) Sivaranjani Namasivayam et al.   mBio

Expansion of commensal fungus Wallemia mellicola in the gastrointestinal mycobiota enhances the severity of allergic airway disease in mice

(2018) Joseph H. Skalski et al.   PLoS Pathogens

Paradigms of Lung Microbiota Functions in Health and Disease, Particularly, in Asthma

(2018) Elliot Mathieu et al.   Frontiers in Physiology

The Host Microbiota Contributes to Early Protection Against Lung Colonization by Mycobacterium tuberculosis

(2018) Alexia Dumas et al.   Frontiers in Immunology

Gut microbiome contributes to impairment of immunity in pulmonary tuberculosis patients by alteration of butyrate and propionate producers

(2017) Abhijit Maji et al.   ENVIRONMENTAL MICROBIOLOGY

Enterosalivary nitrate metabolism and the microbiome: Intersection of microbial metabolism, nitric oxide and diet in cardiac and pulmonary vascular health

(2017) Carl D. Koch et al.   FREE RADICAL BIOLOGY AND MEDICINE

The intestinal microbiota: Antibiotics, colonization resistance, and enteric pathogens

(2017) Sohn Kim et al.   IMMUNOLOGICAL REVIEWS

Host-microbiota interactions and adaptive immunity

(2017) Kathy D. McCoy et al.   IMMUNOLOGICAL REVIEWS

The immune response to Prevotella bacteria in chronic inflammatory disease

(2017) Jeppe Madura Larsen   IMMUNOLOGY

Bacteria isolated from lung modulate asthma susceptibility in mice

(2017) Aude Remot et al.   ISME Journal

Airway microbial dysbiosis in asthmatic patients: A target for prevention and treatment?

(2017) Kian Fan Chung   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Interactions between the microbiota and innate and innate-like lymphocytes

(2017) Michael G. Constantinides   JOURNAL OF LEUKOCYTE BIOLOGY

Urinary metabolite markers characterizing tuberculosis treatment failure

(2017) Laneke Luies et al.   Metabolomics

Colonization with Helicobacter is concomitant with modified gut microbiota and drastic failure of the immune control of Mycobacterium tuberculosis

(2017) L Majlessi et al.   Mucosal Immunology

Corrigendum: Persisting positron emission tomography lesion activity and Mycobacterium tuberculosis mRNA after tuberculosis cure

(2017) Stephanus T Malherbe et al.   NATURE MEDICINE

The microbiota of the respiratory tract: gatekeeper to respiratory health

(2017) Wing Ho Man et al.   NATURE REVIEWS MICROBIOLOGY

Microbiome overview in swine lungs

(2017) Franciele Maboni Siqueira et al.   PLoS One

Dynamic changes of the respiratory microbiota and its relationship to fecal and blood microbiota in healthy young cats

(2017) Aida I. Vientós-Plotts et al.   PLoS One

Genetic mannose binding lectin deficiency is associated with airway microbiota diversity and reduced exacerbation frequency in COPD

(2017) Alison J Dicker et al.   THORAX

The microbiota protects against respiratory infection via GM-CSF signaling

(2017) Rebecca L. Brown et al.   Nature Communications

Innate activation of human primary epithelial cells broadens the host response to Mycobacterium tuberculosis in the airways

(2017) Ann-Kathrin Reuschl et al.   PLoS Pathogens

Alternation of Gut Microbiota in Patients with Pulmonary Tuberculosis

(2017) Mei Luo et al.   Frontiers in Physiology

Memory of Natural Killer Cells: A New Chance against Mycobacterium tuberculosis?

(2017) José Alberto Choreño Parra et al.   Frontiers in Immunology

IL-17 Production from T Helper 17, Mucosal-Associated Invariant T, and γδ Cells in Tuberculosis Infection and Disease

(2017) Felicity Coulter et al.   Frontiers in Immunology

Longitudinal profiling reveals a persistent intestinal dysbiosis triggered by conventional anti-tuberculosis therapy

(2017) Sivaranjani Namasivayam et al.   Microbiome

Characterization of the upper and lower respiratory tract microbiota in Piedmontese calves

(2017) Isabella Nicola et al.   Microbiome

Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details

(2017) Rounak Feigelman et al.   Microbiome

Antibiotic treatment for Tuberculosis induces a profound dysbiosis of the microbiome that persists long after therapy is completed

(2017) Matthew F. Wipperman et al.   Scientific Reports

Increasing rate of inflammatory bowel disease: a 12-year retrospective study in NingXia, China

(2016) Huihong Zhai et al.   BMC GASTROENTEROLOGY

A Functional Role for Antibodies in Tuberculosis

(2016) Lenette L. Lu et al.   CELL

Gut Microbial Metabolites Fuel Host Antibody Responses

(2016) Myunghoo Kim et al.   Cell Host & Microbe

Gut–lung axis: The microbial contributions and clinical implications

(2016) Yang He et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Human isotype‐dependent inhibitory antibody responses against Mycobacterium tuberculosis

(2016) Natalie Zimmermann et al.   EMBO Molecular Medicine

Microbiome diversity in the sputum of patients with pulmonary tuberculosis

(2016) P. Krishna et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Analysis of the intestinal microbial community and inferred functional capacities during the host response to Pneumocystis pneumonia

(2016) Derrick R. Samuelson et al.   EXPERIMENTAL LUNG RESEARCH

Linking microbiota and respiratory disease

(2016) Matthias Hauptmann et al.   FEBS LETTERS

A polymorphism in human MR1 is associated with mRNA expression and susceptibility to tuberculosis

(2016) C Seshadri et al.   GENES AND IMMUNITY

Helicobacter saguini, a Novel Helicobacter Isolated from Cotton-Top Tamarins with Ulcerative Colitis, Has Proinflammatory Properties and Induces Typhlocolitis and Dysplasia in Gnotobiotic IL-10−/−Mice

(2016) Z. Shen et al.   INFECTION AND IMMUNITY

Effects of B Cell Depletion on Early Mycobacterium tuberculosis Infection in Cynomolgus Macaques

(2016) Jiayao Phuah et al.   INFECTION AND IMMUNITY

The respiratory tract microbiome and lung inflammation: a two-way street

(2016) G B Huffnagle et al.   Mucosal Immunology

Emerging pathogenic links between microbiota and the gut–lung axis

(2016) Kurtis F. Budden et al.   NATURE REVIEWS MICROBIOLOGY

Antibiotics, birth mode, and diet shape microbiome maturation during early life

(2016) Nicholas A. Bokulich et al.   Science Translational Medicine

Randomised, double-blind, placebo-controlled trial with azithromycin selects for anti-inflammatory microbial metabolites in the emphysematous lung

(2016) Leopoldo N Segal et al.   THORAX

Microfold Cells Actively Translocate Mycobacterium tuberculosis to Initiate Infection

(2016) Vidhya R. Nair et al.   Cell Reports

Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics

(2016) Juan Jovel et al.   Frontiers in Microbiology

Diabetes Mellitus and Increased Tuberculosis Susceptibility: The Role of Short-Chain Fatty Acids

(2016) Ekta Lachmandas et al.   Journal of Diabetes Research

Alteration in the Gut Microbiota Provokes Susceptibility to Tuberculosis

(2016) Nargis Khan et al.   Frontiers in Immunology

Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype

(2016) Leopoldo N. Segal et al.   Nature Microbiology

Composition and Predicted Metabolic Capacity of Upper and Lower Airway Microbiota of Healthy Dogs in Relation to the Fecal Microbiota

(2016) Aaron C. Ericsson et al.   PLoS One

Dual role of Helicobacter and Campylobacter species in IBD: a systematic review and meta-analysis

(2015) Natalia Castaño-Rodríguez et al.   GUT

The gut microbiota plays a protective role in the host defence against pneumococcal pneumonia

(2015) Tim J Schuijt et al.   GUT

Intestinal Microbiota of Mice Influences Resistance to Staphylococcus aureus Pneumonia

(2015) Stefanie Gauguet et al.   INFECTION AND IMMUNITY

The airway microbiome in patients with severe asthma: Associations with disease features and severity

(2015) Yvonne J. Huang et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Molecular Mechanisms ofHelicobacter pyloriPathogenesis

(2015) Maria De Falco et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Microbiota regulate the ability of lung dendritic cells to induce IgA class-switch recombination and generate protective gastrointestinal immune responses

(2015) Darren Ruane et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Th1 and Th17 Cells in Tuberculosis: Protection, Pathology, and Biomarkers

(2015) I. V. Lyadova et al.   MEDIATORS OF INFLAMMATION

Proteobacteria: microbial signature of dysbiosis in gut microbiota

(2015) Na-Ri Shin et al.   TRENDS IN BIOTECHNOLOGY

Helicobacter hepaticus infection in BALB/c mice abolishes subunit-vaccine-induced protection against M. tuberculosis

(2015) Isabelle C. Arnold et al.   VACCINE

Naturally produced opsonizing antibodies restrict the survival ofMycobacterium tuberculosisin human macrophages by augmenting phagosome maturation

(2015) Shashi Kant Kumar et al.   Open Biology

Clearance of Pneumococcal Colonization in Infants Is Delayed through Altered Macrophage Trafficking

(2015) Steven J. Siegel et al.   PLoS Pathogens

Correlation between Either Cupriavidus or Porphyromonas and Primary Pulmonary Tuberculosis Found by Analysing the Microbiota in Patients’ Bronchoalveolar Lavage Fluid

(2015) Yuhua Zhou et al.   PLoS One

Gut Dysbiosis Promotes M2 Macrophage Polarization and Allergic Airway Inflammation via Fungi-Induced PGE2

(2014) Yun-Gi Kim et al.   Cell Host & Microbe

Respiratory influenza virus infection induces intestinal immune injury via microbiota-mediated Th17 cell–dependent inflammation

(2014) Jian Wang et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Aerosol Mycobacterium tuberculosis Infection Causes Rapid Loss of Diversity in Gut Microbiota

(2014) Kathryn Winglee et al.   PLoS One

Changes in the Bacterial Microbiota in Gut, Blood, and Lungs following Acute LPS Instillation into Mice Lungs

(2014) Marc A. Sze et al.   PLoS One

Respiratory tract clinical sample selection for microbiota analysis in patients with pulmonary tuberculosis

(2014) Luz Botero et al.   Microbiome

The murine lung microbiome in relation to the intestinal and vaginal bacterial communities

(2013) Kenneth Barfod et al.   BMC MICROBIOLOGY

Evaluation of a Diagnostic Algorithm for Sputum Smear–Negative Pulmonary Tuberculosis in HIV-Infected Adults

(2013) Chandrasekaran Padmapriyadarsini et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES

Host-Directed Therapeutics for Tuberculosis: Can We Harness the Host?

(2013) T. R. Hawn et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The gut microbiota — masters of host development and physiology

(2013) Felix Sommer et al.   NATURE REVIEWS MICROBIOLOGY

Sputum Microbiota in Tuberculosis as Revealed by 16S rRNA Pyrosequencing

(2013) Man Kit Cheung et al.   PLoS One

Sputum Microbiota Associated with New, Recurrent and Treatment Failure Tuberculosis

(2013) Jing Wu et al.   PLoS One

Outer Membrane Vesicles of a Human Commensal Mediate Immune Regulation and Disease Protection

(2012) Yue Shen et al.   Cell Host & Microbe

A Novel Human IgA Monoclonal Antibody Protects against Tuberculosis

(2011) S. Balu et al.   JOURNAL OF IMMUNOLOGY

Immunomodulatory mechanisms of lactobacilli

(2011) Jerry M Wells   Microbial Cell Factories

Stop the killing of beneficial bacteria

(2011) Martin Blaser   NATURE

Microbiota regulates immune defense against respiratory tract influenza A virus infection

(2011) T. Ichinohe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Commensal Microflora Contribute to Host Defense Against Escherichia Coli Pneumonia Through Toll-Like Receptors

(2011) Lee-Wei Chen et al.   SHOCK

Prior Helicobacter pylori infection ameliorates Salmonella typhimurium-induced colitis

(2010) Peter D.R. Higgins et al.   INFLAMMATORY BOWEL DISEASES

Infection with Helicobacter pylori Is Associated with Protection against Tuberculosis

(2010) Sharon Perry et al.   PLoS One

Induction of a protective response with an IgA monoclonal antibody against Mycobacterium tuberculosis 16kDa protein in a model of progressive pulmonary infection

(2009) Yamilé López et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY