Unveiling Comparative Genomic Trajectories of Selection and Key Candidate Genes in Egg-Type Russian White and Meat-Type White Cornish Chickens

Assessing the effects of rare alleles and linkage disequilibrium on estimates of genetic diversity in the chicken populations

(2021) N.V. Dementieva et al.   Animal

Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation

(2021) Genxi Zhang et al.   BMC GENOMICS

Effects of age on immune function in broiler chickens

(2021) Bochen Song et al.   Journal of Animal Science and Biotechnology

Genome‐wide SNP analysis clearly distinguished the Belarusian Red cattle from other European cattle breeds

(2021) N. A. Zinovieva et al.   ANIMAL GENETICS

Accumulation of genetic variants associated with immunity in the selective breeding of broilers

(2020) Angela Zou et al.   BMC GENETICS

Transcriptome-based screening of intracellular pathways and angiogenesis related genes at different stages of thiram induced tibial lesions in broiler chickens

(2020) Ali Raza Jahejo et al.   BMC GENOMICS

Genome-wide analysis of the role of DNA methylation in inbreeding depression of reproduction in Langshan chicken

(2020) Wei Han et al.   GENOMICS

A quantitative trait locus on chromosome 2 was identified that accounts for a substantial proportion of phenotypic variance of the yellow plumage color in chicken

(2020) Tao Huang et al.   POULTRY SCIENCE

Genome-wide genetic structure and selection signatures for color in 10 traditional Chinese yellow-feathered chicken breeds

(2020) Xunhe Huang et al.   BMC GENOMICS

Supplementation with free methionine or methionine dipeptide improves meat quality in broilers exposed to heat stress

(2020) Andressa de Freitas Dionizio et al.   JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE

Transcriptome for the breast muscle of Jinghai yellow chicken at early growth stages

(2020) Pengfei Wu et al.   PeerJ

The Landscape of DNA Methylation Associated With the Transcriptomic Network of Intramuscular Adipocytes Generates Insight Into Intramuscular Fat Deposition in Chicken

(2020) Meng Zhang et al.   Frontiers in Cell and Developmental Biology

Identification of candidate genes and regulatory factors related to growth rate through hypothalamus transcriptome analyses in broiler chickens

(2020) Katarzyna Piórkowska et al.   BMC GENOMICS

Deciphering the mode of action and position of genetic variants impacting on egg number in broiler breeders

(2020) Eirini Tarsani et al.   BMC GENOMICS

New insights into the associations among feed efficiency, metabolizable efficiency traits and related QTL regions in broiler chickens

(2020) Wei Li et al.   Journal of Animal Science and Biotechnology

Identification of genes involved in inbreeding depression of reproduction in Langshan chickens

(2020) Qian Xue et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Transcriptional landscape of the embryonic chicken Müllerian duct

(2020) Zahida Yesmin Roly et al.   BMC GENOMICS

Genetic Variability of Indels in the Prolactin and Dopamine Receptor D2 Genes and Their Association with the Yield of Allanto-Amniotic Fluid in Russian White Laying Hens

(2020) Michael ROMANOV et al.   Tarim Bilimleri Dergisi-Journal of Agricultural Sciences

Runs of Homozygosity in Modern Chicken Revealed by Sequence Data

(2020) Reza Talebi et al.   G3-Genes Genomes Genetics

Genetic Variability in Local and Imported Germplasm Chicken Populations as Revealed by Analyzing Runs of Homozygosity

(2020) Natalia V. Dementieva et al.   Animals

Selection signatures in two oldest Russian native cattle breeds revealed using high-density single nucleotide polymorphism analysis

(2020) Natalia Anatolievna Zinovieva et al.   PLoS One

A functional variant in the promoter region of IGF1 gene is associated with chicken abdominal fat deposition

(2020) W.J. Wang et al.   DOMESTIC ANIMAL ENDOCRINOLOGY

Genome-wide association studies targeting the yield of extraembryonic fluid and production traits in Russian White chickens

(2019) Andrei A. Kudinov et al.   BMC GENOMICS

High-density genotyping reveals signatures of selection related to acclimation and economically important traits in 15 local sheep breeds from Russia

(2019) Andrey A. Yurchenko et al.   BMC GENOMICS

Genome‐wide association study for plasma very low‐density lipoprotein concentration in chicken

(2019) Hui Zhang et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Whole-genome resequencing reveals genetic indels of feathered-leg traits in domestic chickens

(2019) Shaohua Yang et al.   JOURNAL OF GENETICS

Genetics of adaptation in modern chicken

(2019) Saber Qanbari et al.   PLoS Genetics

Natural Selection Footprints Among African Chicken Breeds and Village Ecotypes

(2019) Ahmed R. Elbeltagy et al.   Frontiers in Genetics

Genome-Wide Homozygosity Patterns and Evidence for Selection in a Set of European and Near Eastern Horse Breeds

(2019) Grilz-Seger et al.   Genes

Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens

(2019) Gabriel Costa Monteiro Moreira et al.   BMC GENOMICS

Examination of the Expression of Immunity Genes and Bacterial Profiles in the Caecum of Growing Chickens Infected with Salmonella Enteritidis and Fed a Phytobiotic

(2019) Laptev et al.   Animals

Structural and dynamic analysis of G558R mutation in chicken TSHR gene shows altered signal transduction and corroborates its role as a domestication gene

(2019) A. Grottesi et al.   ANIMAL GENETICS

Transcriptional insights into key genes and pathways controlling muscle lipid metabolism in broiler chickens

(2019) Lu Liu et al.   BMC GENOMICS

Whole-genome resequencing analysis of Pengxian Yellow Chicken to identify genome-wide SNPs and signatures of selection

(2019) Huadong Yin et al.   3 Biotech

Genome‐wide re‐sequencing and transcriptome analysis reveal candidate genes associated with the pendulous comb phenotype in domestic chickens

(2019) Xing Guo et al.   ANIMAL SCIENCE JOURNAL

Assessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle

(2018) Elisa Peripolli et al.   BMC GENOMICS

Genome-Wide Association Study and Transcriptome Analysis Provide New Insights into the White/Red Earlobe Color Formation in Chicken

(2018) Wei Luo et al.   CELLULAR PHYSIOLOGY AND BIOCHEMISTRY

Identifying artificial selection signals in the chicken genome

(2018) Yunlong Ma et al.   PLoS One

Reconstruction of the diapsid ancestral genome permits chromosome evolution tracing in avian and non-avian dinosaurs

(2018) Rebecca E. O’Connor et al.   Nature Communications

Whole-Genome Resequencing of Red Junglefowl and Indigenous Village Chicken Reveal New Insights on the Genome Dynamics of the Species

(2018) Raman A. Lawal et al.   Frontiers in Genetics

Exploring evidence of positive selection signatures in cattle breeds selected for different traits

(2017) Mengistie Taye et al.   MAMMALIAN GENOME

Comparative transcriptomics of genetically divergent lines of chickens in response to Marek’s disease virus challenge at cytolytic phase

(2017) Kunzhe Dong et al.   PLoS One

Genome-wide scan and analysis of positive selective signatures in Dwarf Brown-egg Layers and Silky Fowl chickens

(2017) Mengmeng Zhang et al.   POULTRY SCIENCE

Transcriptome analysis of comb and testis from Rose-comb Silky chicken (R1/R1) and Beijing Fatty wild type chicken (r/r)

(2017) Y. Wang et al.   POULTRY SCIENCE

Genome-wide DNA methylation profiles reveal novel candidate genes associated with meat quality at different age stages in hens

(2017) Meng Zhang et al.   Scientific Reports

Genome methylation and regulatory functions for hypoxic adaptation in Tibetan chicken embryos

(2017) Yawen Zhang et al.   PeerJ

Runs of homozygosity: current knowledge and applications in livestock

(2016) E. Peripolli et al.   ANIMAL GENETICS

Genetic diversity and genomic signatures of selection among cattle breeds from Siberia, eastern and northern Europe

(2016) T. Iso-Touru et al.   ANIMAL GENETICS

Detection of genomic signatures of recent selection in commercial broiler chickens

(2016) Weixuan Fu et al.   BMC GENETICS

A domestication related mutation in the thyroid stimulating hormone receptor gene ( TSHR ) modulates photoperiodic response and reproduction in chickens

(2016) Anna-Carin Karlsson et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Genome Resequencing Identifies Unique Adaptations of Tibetan Chickens to Hypoxia and High-Dose Ultraviolet Radiation in High-Altitude Environments

(2016) Qian Zhang et al.   Genome Biology and Evolution

Controlling false discoveries in genome scans for selection

(2016) Olivier François et al.   MOLECULAR ECOLOGY

pophelper: an R package and web app to analyse and visualize population structure

(2016) R. M. Francis   Molecular Ecology Resources

A genome-wide approach to screen for genetic variants in broilers (Gallus gallus) with divergent feed conversion ratio

(2016) Tejas M. Shah et al.   MOLECULAR GENETICS AND GENOMICS

Effect of in ovo feeding of folic acid on the folate metabolism, immune function and epigenetic modification of immune effector molecules of broiler

(2015) Shizhao Li et al.   BRITISH JOURNAL OF NUTRITION

Parallel Selection Revealed by Population Sequencing in Chicken

(2015) Saber Qanbari et al.   Genome Biology and Evolution

Properties of different selection signature statistics and a new strategy for combining them

(2015) Y Ma et al.   HEREDITY

Evolution of the DEAD box helicase family in chicken: chickens have no DHX9 ortholog

(2015) Haruko Sato et al.   MICROBIOLOGY AND IMMUNOLOGY

Promising Loci and Genes for Yolk and Ovary Weight in Chickens Revealed by a Genome-Wide Association Study

(2015) Congjiao Sun et al.   PLoS One

Identification of Promising Mutants Associated with Egg Production Traits Revealed by Genome-Wide Association Study

(2015) Jingwei Yuan et al.   PLoS One

Analysis of runs of homozygosity and their relationship with inbreeding in five cattle breeds farmed in Italy

(2014) Gabriele Marras et al.   ANIMAL GENETICS

Genome resequencing and bioinformatic analysis of SNP containing candidate genes in the autoimmune vitiligo Smyth line chicken model

(2014) Hyeon-Min Jang et al.   BMC GENOMICS

Detection of genome-wide copy number variations in two chicken lines divergently selected for abdominal fat content

(2014) Hui Zhang et al.   BMC GENOMICS

Expression and regulation of avian cathepsin L in the oviduct during molting

(2014) Seung-Min Bae et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Identification of selection signatures in livestock species

(2014) João José de Simoni Gouveia et al.   GENETICS AND MOLECULAR BIOLOGY

Association of leptin receptor gene polymorphisms with growth and feed efficiency in meat-type chickens

(2014) El Mostafa El Moujahid et al.   POULTRY SCIENCE

A bioinformatics workflow for detecting signatures of selection in genomic data

(2014) Murray Cadzow et al.   Frontiers in Genetics

Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations

(2013) M. I. Fariello et al.   GENETICS

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

Genomic Patterns of Homozygosity in Worldwide Human Populations

(2012) Trevor J. Pemberton et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Runs of homozygosity and population history in cattle

(2012) Deirdre C Purfield et al.   BMC GENETICS

The UCSC genome browser and associated tools

(2012) R. M. Kuhn et al.   BRIEFINGS IN BIOINFORMATICS

Estimates of autozygosity derived from runs of homozygosity: empirical evidence from selected cattle populations

(2012) M. Ferenčaković et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Signatures of Selection in the Genomes of Commercial and Non-Commercial Chicken Breeds

(2012) Martin G. Elferink et al.   PLoS One

A High Resolution Genome-Wide Scan for Significant Selective Sweeps: An Application to Pooled Sequence Data in Laying Chickens

(2012) Saber Qanbari et al.   PLoS One

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

Molecular Cloning and Expression of Aven Gene in Chicken

(2011) Elena Vezyri et al.   PROTEIN JOURNAL

Ensembl BioMarts: a hub for data retrieval across taxonomic space

(2011) R. J. Kinsella et al.   Database-The Journal of Biological Databases and Curation

Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended

(2010) Maxime Bonhomme et al.   GENETICS

Genomic rearrangements of the GREM1-FMN1 locus cause oligosyndactyly, radio-ulnar synostosis, hearing loss, renal defects syndrome and Cenani-Lenz-like non-syndromic oligosyndactyly

(2010) B. I. Dimitrov et al.   JOURNAL OF MEDICAL GENETICS

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

Role of Cysteine Cathepsins in Matrix Degradation and Cell Signalling

(2008) Nataša Obermajer et al.   CONNECTIVE TISSUE RESEARCH

Btg1 and Btg2 gene expression during early chick development

(2008) Andrés Kamaid et al.   DEVELOPMENTAL DYNAMICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH