Detection of genome-wide copy number variations in two chicken lines divergently selected for abdominal fat content

A genome-wide association study of variants associated with acquisition of Staphylococcus aureus bacteremia in a healthcare setting

(2014) Charlotte L Nelson et al.   BMC INFECTIOUS DISEASES

Large scale variation in DNA copy number in chicken breeds

(2013) Richard PMA Crooijmans et al.   BMC GENOMICS

Genome wide analysis reveals single nucleotide polymorphisms associated with fatness and putative novel copy number variants in three pig breeds

(2013) Katie E Fowler et al.   BMC GENOMICS

Male infertility and copy number variants (CNVs) in the dog: a two-pronged approach using Computer Assisted Sperm Analysis (CASA) and Fluorescent In Situ Hybridization (FISH)

(2013) Daniele Cassatella et al.   BMC GENOMICS

Analysis of copy number variations in the sheep genome using 50K SNP BeadChip array

(2013) Jiasen Liu et al.   BMC GENOMICS

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins

(2013) Li Jiang et al.   BMC GENOMICS

Genome-Wide Patterns of Genetic Variation in Two Domestic Chickens

(2013) Wen-Lang Fan et al.   Genome Biology and Evolution

Testican-3: a brain-specific proteoglycan member of the BM-40/SPARC/osteonectin family

(2013) Ursula Hartmann et al.   JOURNAL OF NEUROCHEMISTRY

Genome-Wide Copy Number Variations Inferred from SNP Genotyping Arrays Using a Large White and Minzhu Intercross Population

(2013) Ligang Wang et al.   PLoS One

Short Copy Number Variations Potentially Associated with Tonic Immobility Responses in Newly Hatched Chicks

(2013) Hideaki Abe et al.   PLoS One

Genome-Wide Copy Number Variant Analysis in Inbred Chickens Lines With Different Susceptibility to Marek’s Disease

(2013) Juan Luo et al.   G3-Genes Genomes Genetics

A genome-wide survey of copy number variation regions in various chicken breeds by array comparative genomic hybridization method

(2012) Y. Wang et al.   ANIMAL GENETICS

Copy number variations identified in the chicken using a 60K SNP BeadChip

(2012) X. Jia et al.   ANIMAL GENETICS

Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip

(2012) Yuliaxis Ramayo-Caldas et al.   BMC GENOMICS

A genome-wide detection of copy number variations using SNP genotyping arrays in swine

(2012) Jiying Wang et al.   BMC GENOMICS

A comprehensive survey of copy number variation in 18 diverse pig populations and identification of candidate copy number variable genes associated with complex traits

(2012) Congying Chen et al.   BMC GENOMICS

A genome-wide scan of selective sweeps in two broiler chicken lines divergently selected for abdominal fat content

(2012) Hui Zhang et al.   BMC GENOMICS

The Ancient and Evolving Roles of Cohesin in Gene Expression and DNA Repair

(2012) Dale Dorsett et al.   CURRENT BIOLOGY

The differentiation and movement of presomitic mesoderm progenitor cells are controlled by Mesogenin 1

(2012) R. Fior et al.   DEVELOPMENT

Selection Signature Analysis Implicates the PC1/PCSK1 Region for Chicken Abdominal Fat Content

(2012) Hui Zhang et al.   PLoS One

Genome-Wide Identification of Copy Number Variations in Chinese Holstein

(2012) Li Jiang et al.   PLoS One

Genomic characteristics of cattle copy number variations

(2011) Yali Hou et al.   BMC GENOMICS

The development and characterization of a 60K SNP chip for chicken

(2011) Martien AM Groenen et al.   BMC GENOMICS

A high-resolution integrated map of copy number polymorphisms within and between breeds of the modern domesticated dog

(2011) Thomas J Nicholas et al.   BMC GENOMICS

A follow-up study for left ventricular mass on chromosome 12p11 identifies potential candidate genes

(2011) David Della-Morte et al.   BMC Medical Genetics

Low ANXA10 expression is associated with disease aggressiveness in bladder cancer

(2011) P P Munksgaard et al.   BRITISH JOURNAL OF CANCER

Potential Role of Regulatory T Cells in Reversing Obesity-Linked Insulin Resistance and Diabetic Nephropathy

(2011) Kathrin Eller et al.   DIABETES

Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants

(2011) Dalila Pinto et al.   NATURE BIOTECHNOLOGY

The Dark brown plumage color in chickens is caused by an 8.3-kb deletion upstream of SOX10

(2011) Ulrika Gunnarsson et al.   Pigment Cell & Melanoma Research

Helios Transcription Factor Expression Depends on Gsx2 and Dlx1&2 Function in Developing Striatal Matrix Neurons

(2011) Raquel Martín-Ibáñez et al.   STEM CELLS AND DEVELOPMENT

A Complex Genomic Rearrangement Involving the Endothelin 3 Locus Causes Dermal Hyperpigmentation in the Chicken

(2011) Ben Dorshorst et al.   PLoS Genetics

Mutations in Myosin Light Chain Kinase Cause Familial Aortic Dissections

(2010) Li Wang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Transcriptional inhibition of intestinal NHE8 expression by glucocorticoids involves Pax5

(2010) Hua Xu et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

CONAN: copy number variation analysis software for genome-wide association studies

(2010) Lukas Forer et al.   BMC BIOINFORMATICS

R-Gada: a fast and flexible pipeline for copy number analysis in association studies

(2010) Roger Pique-Regi et al.   BMC BIOINFORMATICS

Copy number variation in the bovine genome

(2010) João Fadista et al.   BMC GENOMICS

An initial comparative map of copy number variations in the goat (Capra hircus) genome

(2010) Luca Fontanesi et al.   BMC GENOMICS

An initial map of chromosomal segmental copy number variations in the chicken

(2010) Xiaofei Wang et al.   BMC GENOMICS

Copy Number Variation and Missense Mutations of the Agouti Signaling Protein (ASIP) Gene in Goat Breeds with Different Coat Colors

(2010) L. Fontanesi et al.   CYTOGENETIC AND GENOME RESEARCH

SOX5 controls cell cycle progression in neural progenitors by interfering with the WNT–β-catenin pathway

(2010) Patricia L Martinez-Morales et al.   EMBO REPORTS

Mechanism of Holliday junction resolution by the human GEN1 protein

(2010) U. Rass et al.   GENES & DEVELOPMENT

Genome-wide association and genomic selection in animal breedingThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

(2010) Ben Hayes et al.   GENOME

Analysis of copy number variations among diverse cattle breeds

(2010) G. E. Liu et al.   GENOME RESEARCH

A first comparative map of copy number variations in the sheep genome

(2010) L. Fontanesi et al.   GENOMICS

Structural Analysis of Mg2+and Ca2+Binding, Myristoylation, and Dimerization of the Neuronal Calcium Sensor and Visinin-like Protein 1 (VILIP-1)

(2010) Congmin Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Expression of Helios, an Ikaros Transcription Factor Family Member, Differentiates Thymic-Derived from Peripherally Induced Foxp3+ T Regulatory Cells

(2010) A. M. Thornton et al.   JOURNAL OF IMMUNOLOGY

Comparative analyses of seven algorithms for copy number variant identification from single nucleotide polymorphism arrays

(2010) Andrew E. Dellinger et al.   NUCLEIC ACIDS RESEARCH

Population Analysis of Large Copy Number Variants and Hotspots of Human Genetic Disease

(2009) Andy Itsara et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Testican 3 expression in adult T-cell leukemia

(2009) Mikio Kamioka et al.   LEUKEMIA RESEARCH

Copy number variation at 1q21.1 associated with neuroblastoma

(2009) Sharon J. Diskin et al.   NATURE

Origins and functional impact of copy number variation in the human genome

(2009) Donald F. Conrad et al.   NATURE

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

(2009) Antonio M. Ramos et al.   PLoS One

Copy Number Variation in Intron 1 of SOX5 Causes the Pea-comb Phenotype in Chickens

(2009) Dominic Wright et al.   PLoS Genetics

An optimization framework for unsupervised identification of rare copy number variation from SNP array data

(2009) Gökhan Yavaş et al.   GENOME BIOLOGY

High resolution discovery and confirmation of copy number variants in 90 Yoruba Nigerians

(2009) Hajime Matsuzaki et al.   GENOME BIOLOGY

Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution

(2008) Darren K Griffin et al.   BMC GENOMICS

Partial duplication of the PRLR and SPEF2 genes at the late feathering locus in chicken

(2008) Martin G Elferink et al.   BMC GENOMICS

Sperm-Associated Antigen 9 Is Associated With Tumor Growth, Migration, and Invasion in Renal Cell Carcinoma

(2008) M. Garg et al.   CANCER RESEARCH

Bayesian EM algorithm for scoring polymorphic deletions from SNP data and application to a common CNV on 8q24

(2008) Sebastian Zöllner et al.   GENETIC EPIDEMIOLOGY

A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep

(2008) B. J. Norris et al.   GENOME RESEARCH

Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs

(2008) Joshua M Korn et al.   NATURE GENETICS

Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms

(2008) Sharon J. Diskin et al.   NUCLEIC ACIDS RESEARCH

A Snapshot of CNVs in the Pig Genome

(2008) João Fadista et al.   PLoS One

Phylogenetic Analysis and Identification of Pseudogenes Reveal a Progressive Loss of Zona Pellucida Genes During Evolution of Vertebrates1

(2007) Ghylène Goudet et al.   BIOLOGY OF REPRODUCTION