Transcriptome analysis of comb and testis from Rose-comb Silky chicken (R1/R1) and Beijing Fatty wild type chicken (r/r)

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

qgraph: Network Visualizations of Relationships in Psychometric Data

(2015) Sacha Epskamp et al.   Journal of Statistical Software

The impact of chromosomal rearrangements on regulation of gene expression

(2014) L. Harewood et al.   HUMAN MOLECULAR GENETICS

Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment

(2014) Jim R Hughes et al.   NATURE GENETICS

Molecular consequences of animal breeding

(2013) Leif Andersson   CURRENT OPINION IN GENETICS & DEVELOPMENT

Detecting selection

(2013) Gregory S. Barsh et al.   NATURE

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Serial translocation by means of circular intermediates underlies colour sidedness in cattle

(2012) Keith Durkin et al.   NATURE

Sonic Hedgehog-Signalling Patterns the Developing Chicken Comb as Revealed by Exploration of the Pea-comb Mutation

(2012) Henrik Boije et al.   PLoS One

The Rose-comb Mutation in Chickens Constitutes a Structural Rearrangement Causing Both Altered Comb Morphology and Defective Sperm Motility

(2012) Freyja Imsland et al.   PLoS Genetics

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

How selective sweeps in domestic animals provide new insight into biological mechanisms

(2011) L. Andersson   JOURNAL OF INTERNAL MEDICINE

Pharmacological Modulation of the Hedgehog Pathway Differentially Affects Dorsal/Ventral Patterning in Mouse and Human Embryonic Stem Cell Models of Telencephalic Development

(2011) Roxana Nat et al.   STEM CELLS AND DEVELOPMENT

Cryptic Patterning of Avian Skin Confers a Developmental Facility for Loss of Neck Feathering

(2011) Chunyan Mou et al.   PLOS BIOLOGY

Early evolution of the LIM homeobox gene family

(2010) Mansi Srivastava et al.   BMC BIOLOGY

A Simple Genetic Architecture Underlies Morphological Variation in Dogs

(2010) Adam R. Boyko et al.   PLOS BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Copy Number Variation in Intron 1 of SOX5 Causes the Pea-comb Phenotype in Chickens

(2009) Dominic Wright et al.   PLoS Genetics

Expression and functional characterization of cytochrome P450 26A1, a retinoic acid hydroxylase

(2008) Justin D. Lutz et al.   BIOCHEMICAL PHARMACOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS