Assessing the effects of rare alleles and linkage disequilibrium on estimates of genetic diversity in the chicken populations

The Assessing the genetic differentiation of Holstein cattle herds in the Leningrad region using Fst statistics

(2018) Michael Grigorievich Smaragdov et al.   AGRICULTURAL AND FOOD SCIENCE

Genetic diversity analysis of Thai indigenous chickens based on complete sequences of mitochondrial DNA D-loop region

(2018) Piyanat Teinlek et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies

(2018) Dorcus Kholofelo Malomane et al.   BMC GENOMICS

The effects of recent changes in breeding preferences on maintaining traditional Dutch chicken genomic diversity

(2018) Chiara Bortoluzzi et al.   HEREDITY

Estimation of linkage disequilibrium and analysis of genetic diversity in Korean chicken lines

(2018) Dongwon Seo et al.   PLoS One

Genome-wide analysis of across herd F st Heterogeneity in holsteinized cattle

(2016) M. G. Smaragdov et al.   RUSSIAN JOURNAL OF GENETICS

Population structure and history of the Welsh sheep breeds determined by whole genome genotyping

(2015) Sarah E. Beynon et al.   BMC GENETICS

The effect of rare alleles on estimated genomic relationships from whole genome sequence data

(2015) Sonia E Eynard et al.   BMC GENETICS

A molecular analysis of the patterns of genetic diversity in local chickens from western Algeria in comparison with commercial lines and wild jungle fowls

(2015) F. Z. Mahammi et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Population genetic structure, linkage disequilibrium and effective population size of conserved and extensively raised village chicken populations of Southern Africa

(2015) Khulekani S. Khanyile et al.   Frontiers in Genetics

Population structure of four Thai indigenous chicken breeds

(2014) Supamit Mekchay et al.   BMC GENETICS

SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it

(2013) Joseph Lachance et al.   BIOESSAYS

Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations

(2013) M. I. Fariello et al.   GENETICS

Estimating and interpreting FST: The impact of rare variants

(2013) G. Bhatia et al.   GENOME RESEARCH

Impact of Marker Ascertainment Bias on Genomic Selection Accuracy and Estimates of Genetic Diversity

(2013) Nicolas Heslot et al.   PLoS One

The Relationship Between FST and the Frequency of the Most Frequent Allele

(2012) M. Jakobsson et al.   GENETICS

Analysis of genome-wide structure, diversity and fine mapping of Mendelian traits in traditional and village chickens

(2012) D Wragg et al.   HEREDITY

Estimation of historical effective population size using linkage disequilibria with marker data

(2012) L.J. Corbin et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Differential confounding of rare and common variants in spatially structured populations

(2012) Iain Mathieson et al.   NATURE GENETICS

Estimating population divergence time and phylogeny from single-nucleotide polymorphisms data with outgroup ascertainment bias

(2011) YONG WANG et al.   MOLECULAR ECOLOGY

Genetic diversity and genealogical origins of domestic chicken

(2011) M. ELTANANY et al.   WORLDS POULTRY SCIENCE JOURNAL

Linkage disequilibrium reveals different demographic history in egg laying chickens

(2010) Saber Qanbari et al.   BMC GENETICS

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic structure of a wide-spectrum chicken gene pool

(2009) Z. Granevitze et al.   ANIMAL GENETICS

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

Shifting Paradigm of Association Studies: Value of Rare Single-Nucleotide Polymorphisms

(2008) Ivan P. Gorlov et al.   AMERICAN JOURNAL OF HUMAN GENETICS

GSTand its relatives do not measure differentiation

(2008) LOU JOST   MOLECULAR ECOLOGY

Genome-wide assessment of worldwide chicken SNP genetic diversity indicates significant absence of rare alleles in commercial breeds

(2008) W. M. Muir et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA