Identification of selection signatures in livestock species

Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs

(2013) Anna Esteve-Codina et al.   BMC GENOMICS

Whole Genome Association Studies of Residual Feed Intake and Related Traits in the Pig

(2013) Suneel K. Onteru et al.   PLoS One

Genome-Wide Analysis Reveals Selection for Important Traits in Domestic Horse Breeds

(2013) Jessica L. Petersen et al.   PLoS Genetics

Genomic scan of selective sweeps in thin and fat tail sheep breeds for identifying of candidate regions associated with fat deposition

(2012) Mohammad Hossein Moradi et al.   BMC GENETICS

Combining evidence of selection with association analysis increases power to detect regions influencing complex traits in dairy cattle

(2012) Hermann Schwarzenbacher et al.   BMC GENOMICS

Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice

(2012) Lisa S. Andersson et al.   NATURE

Analyses of pig genomes provide insight into porcine demography and evolution

(2012) Martien A. M. Groenen et al.   NATURE

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

(2012) Yang Dong et al.   NATURE BIOTECHNOLOGY

Strong signatures of selection in the domestic pig genome

(2012) C.-J. Rubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

Revisiting the quantitative trait loci for milk production traits on BTA6

(2011) R. Weikard et al.   ANIMAL GENETICS

Identification of divergently selected regions between Japanese Black and Holstein cattle using bovine 50k SNP array

(2011) Daisuke HOSOKAWA et al.   ANIMAL SCIENCE JOURNAL

Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle

(2011) Marte Sodeland et al.   BMC GENETICS

Information content in genome-wide scans: concordance between patterns of genetic differentiation and linkage mapping associations

(2011) Pamela Wiener et al.   BMC GENOMICS

Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle

(2011) Saber Qanbari et al.   BMC GENOMICS

Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population

(2011) SUSAN E. JOHNSTON et al.   MOLECULAR ECOLOGY

Genome-Wide Footprints of Pig Domestication and Selection Revealed through Massive Parallel Sequencing of Pooled DNA

(2011) Andreia J. Amaral et al.   PLoS One

Deciphering the genetic basis of animal domestication

(2011) P. Wiener et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic heterogeneity and selection signature at the KIT gene in pigs showing different coat colours and patterns

(2010) L. Fontanesi et al.   ANIMAL GENETICS

Targets of selection in the Thoroughbred genome contain exercise-relevant gene SNPs associated with elite racecourse performance

(2010) E. W. Hill et al.   ANIMAL GENETICS

The sheep genome reference sequence: a work in progress

(2010) et al.   ANIMAL GENETICS

Haplotype allelic classes for detecting ongoing positive selection

(2010) Julie Hussin et al.   BMC BIOINFORMATICS

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended

(2010) Maxime Bonhomme et al.   GENETICS

Identification of Selection Signatures in Cattle Breeds Selected for Dairy Production

(2010) A. Stella et al.   GENETICS

Prospecting candidate SNPs for backfat in Canchim beef cattle

(2010) G.B. Veneroni et al.   GENETICS AND MOLECULAR RESEARCH

Artificial selection of the melanocortin receptor 1 gene in Chinese domestic pigs during domestication

(2010) J Li et al.   HEREDITY

Using Population Genomics to Detect Selection in Natural Populations: Key Concepts and Methodological Considerations

(2010)   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Association analysis of single nucleotide polymorphisms in DGAT1, TG and FABP4 genes and intramuscular fat in crossbred Bos taurus cattle

(2010) L. Pannier et al.   MEAT SCIENCE

Genetic hitchhiking versus background selection: the controversy and its implications

(2010) W. Stephan   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome Wide Association Studies for Milk Production Traits in Chinese Holstein Population

(2010) Li Jiang et al.   PLoS One

Genetic Architecture of Complex Traits and Accuracy of Genomic Prediction: Coat Colour, Milk-Fat Percentage, and Type in Holstein Cattle as Contrasting Model Traits

(2010) Ben J. Hayes et al.   PLoS Genetics

Database of cattle candidate genes and genetic markers for milk production and mastitis

(2009) J. Ogorevc et al.   ANIMAL GENETICS

Assessment of selection mapping near themyostatingene (GDF-8) in cattle

(2009) P. Wiener et al.   ANIMAL GENETICS

Genome wide signatures of positive selection: The comparison of independent samples and the identification of regions associated to traits

(2009) William Barendse et al.   BMC GENOMICS

A whole genome Bayesian scan for adaptive genetic divergence in West African cattle

(2009) Mathieu Gautier et al.   BMC GENOMICS

An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in Domestic cattle

(2009) Sean MacEachern et al.   BMC GENOMICS

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Distribution and location of genetic effects for dairy traits

(2009) J.B. Cole et al.   JOURNAL OF DAIRY SCIENCE

Learning to Count: Robust Estimates for Labeled Distances between Molecular Sequences

(2009) J. D. O'Brien et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide scans for footprints of natural selection

(2009) T. K. Oleksyk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds

(2009) James W. Kijas et al.   PLoS One

A Genome Scan for Positive Selection in Thoroughbred Horses

(2009) Jingjing Gu et al.   PLoS One

The Genome Response to Artificial Selection: A Case Study in Dairy Cattle

(2009) Laurence Flori et al.   PLoS One

In the light of evolution III: Two centuries of Darwin

(2009) J. C. Avise et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From wild animals to domestic pets, an evolutionary view of domestication

(2009) C. A. Driscoll et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds

(2009) et al.   SCIENCE

Revealing the History of Sheep Domestication Using Retrovirus Integrations

(2009) B. Chessa et al.   SCIENCE

Contrasting Mode of Evolution at a Coat Color Locus in Wild and Domestic Pigs

(2009) Meiying Fang et al.   PLoS Genetics

The origin of selection signatures on bovine chromosome 6

(2008) B. J. Hayes et al.   ANIMAL GENETICS

Linkage disequilibrium and signatures of selection on chromosomes 19 and 29 in beef and dairy cattle

(2008) A. Prasad et al.   ANIMAL GENETICS

A genome map of divergent artificial selection betweenBos taurusdairy cattle andBos taurusbeef cattle

(2008) B. J. Hayes et al.   ANIMAL GENETICS

Selection in the Making: A Worldwide Survey of Haplotypic Diversity Around a Causative Mutation in Porcine IGF2

(2008) A. Ojeda et al.   GENETICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals

(2008) S. Naderi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA