Genetics of adaptation in modern chicken

IGSF10mutations dysregulate gonadotropin‐releasing hormone neuronal migration resulting in delayed puberty

(2016) Sasha R Howard et al.   EMBO Molecular Medicine

Identification of the Long-Sought Leptin in Chicken and Duck: Expression Pattern of the Highly GC-Rich AvianleptinFits an Autocrine/Paracrine Rather Than Endocrine Function

(2016) Eyal Seroussi et al.   ENDOCRINOLOGY

A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

(2016) Wesley C. Warren et al.   G3-Genes Genomes Genetics

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

(2016) Alvaro Martinez Barrio et al.   eLife

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

Myogenin is a positive regulator of MEGF10 expression in skeletal muscle

(2014) Seung-Yoon Park et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Population Genomic Analyses Based on 1 Million SNPs in Commercial Egg Layers

(2014) Mahmood Gholami et al.   PLoS One

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

(2014) M. Carneiro et al.   SCIENCE

Classic Selective Sweeps Revealed by Massive Sequencing in Cattle

(2014) Saber Qanbari et al.   PLoS Genetics

Molecular consequences of animal breeding

(2013) Leif Andersson   CURRENT OPINION IN GENETICS & DEVELOPMENT

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Genome-Wide Association Study Identified a Narrow Chromosome 1 Region Associated with Chicken Growth Traits

(2012) Liang Xie et al.   PLoS One

Mutations in MEGF10, a regulator of satellite cell myogenesis, cause early onset myopathy, areflexia, respiratory distress and dysphagia (EMARDD)

(2011) Clare V Logan et al.   NATURE GENETICS

Linkage disequilibrium reveals different demographic history in egg laying chickens

(2010) Saber Qanbari et al.   BMC GENETICS

Trade-off between growth and immune function: a meta-analysis of selection experiments

(2010) Peter J. van der Most et al.   FUNCTIONAL ECOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants

(2010) Yingrui Li et al.   NATURE GENETICS

 -Catenin activity in the dermal papilla of the hair follicle regulates pigment-type switching

(2010) D. Enshell-Seijffers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vertebrate pigmentation: from underlying genes to adaptive function

(2010) Joanna K. Hubbard et al.   TRENDS IN GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Partial duplication of the PRLR and SPEF2 genes at the late feathering locus in chicken

(2008) Martin G Elferink et al.   BMC GENOMICS

Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome

(2008) Adam R. Boyko et al.   PLoS Genetics

Identification of the Yellow Skin Gene Reveals a Hybrid Origin of the Domestic Chicken

(2008) Jonas Eriksson et al.   PLoS Genetics