Bidirectional epithelial–mesenchymal crosstalk provides self-sustaining profibrotic signals in pulmonary fibrosis

ASPP1 deficiency promotes epithelial-mesenchymal transition, invasion and metastasis in colorectal cancer

(2020) Dian Liu et al.   Cell Death & Disease

SPARC Negatively Correlates With Prognosis After Transarterial Chemoembolization and Facilitates Proliferation and Metastasis of Hepatocellular Carcinoma via ERK/MMP Signaling Pathways

(2020) Yao Liu et al.   Frontiers in Oncology

Paracrine SPARC signaling dysregulates alveolar epithelial barrier integrity and function in lung fibrosis

(2020) Franco Conforti et al.   Cell Death Discovery

Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0)

(2019) Huaiyu Mi et al.   Nature Protocols

Autophagy inhibition specifically promotes epithelial-mesenchymal transition and invasion in RAS-mutated cancer cells

(2019) Yihua Wang et al.   Autophagy

Silencing of SPARC represses heterotopic ossification via inhibition of the MAPK signaling pathway

(2019) Qianjun Wang et al.   BIOSCIENCE REPORTS

Autophagy inhibition-mediated epithelial–mesenchymal transition augments local myofibroblast differentiation in pulmonary fibrosis

(2019) Charlotte Hill et al.   Cell Death & Disease

Transcriptomic evidence of immune activation in macroscopically normal-appearing and scarred lung tissues in idiopathic pulmonary fibrosis

(2018) Irina G. Luzina et al.   CELLULAR IMMUNOLOGY

Nanoscale dysregulation of collagen structure-function disrupts mechano-homeostasis and mediates pulmonary fibrosis

(2018) Mark G Jones et al.   eLife

Diagnosis of Idiopathic Pulmonary Fibrosis. An Official ATS/ERS/JRS/ALAT Clinical Practice Guideline

(2018) Ganesh Raghu et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Paracrine signalling during ZEB1-mediated epithelial–mesenchymal transition augments local myofibroblast differentiation in lung fibrosis

(2018) Liudi Yao et al.   CELL DEATH AND DIFFERENTIATION

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

Oncogenic RAS Signaling Promotes Tumor Immunoresistance by Stabilizing PD-L1 mRNA

(2017) Matthew A. Coelho et al.   IMMUNITY

Secreted Protein Acidic and Rich in Cysteine (SPARC) Enhances Cell Proliferation, Migration, and Epithelial Mesenchymal Transition, and SPARC Expression is Associated with Tumor Grade in Head and Neck Cancer

(2017) Chih-Hau Chang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Idiopathic pulmonary fibrosis

(2017) Luca Richeldi et al.   LANCET

Cellular senescence mediates fibrotic pulmonary disease

(2017) Marissa J. Schafer et al.   Nature Communications

The histone deacetylase inhibitor, romidepsin, as a potential treatment for pulmonary fibrosis

(2017) Franco Conforti et al.   Oncotarget

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Association Between Interstitial Lung Abnormalities and All-Cause Mortality

(2016) Rachel K. Putman et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

SPARC Ameliorates Ovarian Cancer-Associated Inflammation

(2015) Neveen A. Said et al.   NEOPLASIA

Fibrosis of two: Epithelial cell-fibroblast interactions in pulmonary fibrosis

(2013) Norihiko Sakai et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

GSVA: gene set variation analysis for microarray and RNA-Seq data

(2013) Sonja Hänzelmann et al.   BMC BIOINFORMATICS

Overexpression of c-Met and CD44v6 Receptors Contributes to Autocrine TGF-β1 Signaling in Interstitial Lung Disease

(2013) Shibnath Ghatak et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Matrikine and matricellular regulators of EGF receptor signaling on cancer cell migration and invasion

(2013) Jelena Grahovac et al.   LABORATORY INVESTIGATION

Coordinate Direct Input of Both KRAS and IGF1 Receptor to Activation of PI3 kinase in KRAS -Mutant Lung Cancer

(2013) Miriam Molina-Arcas et al.   Cancer Discovery

Epithelial-mesenchymal crosstalk alteration in kidney fibrosis

(2012) Marco Prunotto et al.   JOURNAL OF PATHOLOGY

Indoxyl sulfate-induced epithelial-to-mesenchymal transition and apoptosis of renal tubular cells as novel mechanisms of progression of renal disease

(2012) Su Hyun Kim et al.   LABORATORY INVESTIGATION

Integrating mechanisms of pulmonary fibrosis

(2011) Thomas A. Wynn   JOURNAL OF EXPERIMENTAL MEDICINE

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

SPARC Suppresses Apoptosis of Idiopathic Pulmonary Fibrosis Fibroblasts through Constitutive Activation of β-Catenin

(2010) Wenteh Chang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reactive Oxygen Species Promote Caspase-12 Expression and Tubular Apoptosis in Diabetic Nephropathy

(2010) M. L. Brezniceanu et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Adenovirus-mediated inhibition of SPARC attenuates liver fibrosis in rats

(2008) Alejandra M. Camino et al.   JOURNAL OF GENE MEDICINE

tPA Protects Renal Interstitial Fibroblasts and Myofibroblasts from Apoptosis

(2008) K. Hu et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Idiopathic pulmonary fibrosis

(2008) Eric B Meltzer et al.   Orphanet Journal of Rare Diseases