REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis

(2011) Barry R Zeeberg et al.   BMC BIOINFORMATICS

Cytoscape Web: an interactive web-based network browser

(2010) Christian T. Lopes et al.   BIOINFORMATICS

Rapid Sequence and Expression Divergence Suggest Selection for Novel Function in Primate-Specific KRAB-ZNF Genes

(2010) K. Nowick et al.   MOLECULAR BIOLOGY AND EVOLUTION

GOing Bayesian: model-based gene set analysis of genome-scale data

(2010) Sebastian Bauer et al.   NUCLEIC ACIDS RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Translational Selection Is Ubiquitous in Prokaryotes

(2010) Fran Supek et al.   PLoS Genetics

SimCT: a generic tool to visualize ontology-based relationships for biological objects

(2009) Carl Herrmann et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

(2008) S. Bauer et al.   BIOINFORMATICS

The GOA database in 2009--an integrated Gene Ontology Annotation resource

(2008) D. Barrell et al.   NUCLEIC ACIDS RESEARCH