RNA sequencing: new technologies and applications in cancer research
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
RNA sequencing: new technologies and applications in cancer research
Authors
Keywords
-
Journal
Journal of Hematology & Oncology
Volume 13, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-12-04
DOI
10.1186/s13045-020-01005-x
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The immune microenvironment and neoantigen landscape of aggressive salivary gland carcinomas differ by subtype
- (2020) Luc GT Morris et al. CLINICAL CANCER RESEARCH
- Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation
- (2020) Alan Selewa et al. Scientific Reports
- Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification
- (2020) Matthew T Parker et al. eLife
- Tumor mutational burden is associated with poor outcomes in diffuse glioma
- (2020) Lihong Wang et al. BMC CANCER
- Single-Cell Analyses Inform Mechanisms of Myeloid-Targeted Therapies in Colon Cancer
- (2020) Lei Zhang et al. CELL
- Integration of ATAC-seq and RNA-seq Unravels Chromatin Accessibility during Sex Reversal in Orange-Spotted Grouper (Epinephelus coioides)
- (2020) Xi Wu et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- An Auristatin nanoconjugate targeting CXCR4+ leukemic cells blocks acute myeloid leukemia dissemination
- (2020) Victor Pallarès et al. Journal of Hematology & Oncology
- Dissecting cellular crosstalk by sequencing physically interacting cells
- (2020) Amir Giladi et al. NATURE BIOTECHNOLOGY
- Long non-coding RNA RAMS11 promotes metastatic colorectal cancer progression
- (2020) Jessica M. Silva-Fisher et al. Nature Communications
- ASNEO: Identification of personalized alternative splicing based neoantigens with RNA-seq
- (2020) Zhanbing Zhang et al. Aging-US
- Coupled scRNA-Seq and Intracellular Protein Activity Reveal an Immunosuppressive Role of TREM2 in Cancer
- (2020) Yonatan Katzenelenbogen et al. CELL
- Reconstruction of cell spatial organization from single-cell RNA sequencing data based on ligand-receptor mediated self-assembly
- (2020) Xianwen Ren et al. CELL RESEARCH
- Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application
- (2020) Yu-Meng Sun et al. Journal of Hematology & Oncology
- Decoding the epitranscriptional landscape from native RNA sequences
- (2020) Piroon Jenjaroenpun et al. NUCLEIC ACIDS RESEARCH
- New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs
- (2020) Shoudong Zhang et al. NUCLEIC ACIDS RESEARCH
- Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction
- (2020) Fangda Song et al. Nature Communications
- Single-cell transcriptomics identifies multiple pathways underlying antitumor function of TCR- and CD8αβ-engineered human CD4+ T cells
- (2020) Jan A. Rath et al. Science Advances
- Advances in targeted therapy for acute myeloid leukemia
- (2020) Jifeng Yu et al. Biomarker Research
- Unique TP53 neoantigen and the immune microenvironment in long-term survivors of Hepatocellular carcinoma
- (2020) Huayu Yang et al. CANCER IMMUNOLOGY IMMUNOTHERAPY
- The altered transcriptome of pediatric myelodysplastic syndrome revealed by RNA sequencing
- (2020) Lorena Zubovic et al. Journal of Hematology & Oncology
- Roles of METTL3 in cancer: mechanisms and therapeutic targeting
- (2020) Chengwu Zeng et al. Journal of Hematology & Oncology
- The functions and clinical significance of circRNAs in hematological malignancies
- (2020) Xiangxiang Zhou et al. Journal of Hematology & Oncology
- High-throughput approaches for precision medicine in high-grade serous ovarian cancer
- (2020) Meinusha Govindarajan et al. Journal of Hematology & Oncology
- Massively parallel and time-resolved RNA sequencing in single cells with scNT-seq
- (2020) Qi Qiu et al. NATURE METHODS
- Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics
- (2020) Anna S. Nam et al. NATURE REVIEWS GENETICS
- Multiplexed single-cell transcriptional response profiling to define cancer vulnerabilities and therapeutic mechanism of action
- (2020) James M. McFarland et al. Nature Communications
- A map of tumor–host interactions in glioma at single-cell resolution
- (2020) Francesca Pia Caruso et al. GigaScience
- Construction of a Nomogram Based on a Hypoxia-Related lncRNA Signature to Improve the Prediction of Gastric Cancer Prognosis
- (2020) Qian Chen et al. Frontiers in Genetics
- Dynamic single-cell RNA sequencing identifies immunotherapy persister cells following PD-1 blockade
- (2020) Kartik Sehgal et al. JOURNAL OF CLINICAL INVESTIGATION
- Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia
- (2019) Alva Rani James et al. Journal of Hematology & Oncology
- Pan-cancer Genomic Analyses Reveal Prognostic and Immunogenic Features of the Tumor Melatonergic Microenvironment Across 14 Solid Cancer Types
- (2019) Jia-Wei Lv et al. JOURNAL OF PINEAL RESEARCH
- RNA-Seq profiling of circular RNAs in human colorectal Cancer liver metastasis and the potential biomarkers
- (2019) Hanchen Xu et al. Molecular Cancer
- Diagnosis of fusion genes using targeted RNA sequencing
- (2019) Erin E. Heyer et al. Nature Communications
- Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution
- (2019) Samuel G. Rodriques et al. SCIENCE
- Expression and functional relevance of long non-coding RNAs in acute myeloid leukemia stem cells
- (2019) Marius Bill et al. LEUKEMIA
- Single-Cell RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity
- (2019) Peter van Galen et al. CELL
- ScanNeo: identifying indel derived neoantigens using RNA-Seq data
- (2019) Ting-You Wang et al. BIOINFORMATICS
- Single-Cell Transcriptomics of Human and Mouse Lung Cancers Reveals Conserved Myeloid Populations across Individuals and Species
- (2019) Rapolas Zilionis et al. IMMUNITY
- Combination regimens with PD-1/PD-L1 immune checkpoint inhibitors for gastrointestinal malignancies
- (2019) Dongxu Wang et al. Journal of Hematology & Oncology
- Role of microRNAs, circRNAs and long noncoding RNAs in acute myeloid leukemia
- (2019) Yan Liu et al. Journal of Hematology & Oncology
- DNA-Based versus RNA-Based Detection of MET Exon 14 Skipping Events in Lung Cancer
- (2019) Kurtis D. Davies et al. Journal of Thoracic Oncology
- Exosomal tRNA-derived small RNA as a promising biomarker for cancer diagnosis
- (2019) Lei Zhu et al. Molecular Cancer
- Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development
- (2019) Ryan M.J. Genga et al. Cell Reports
- Reduced Neoantigen Expression Revealed by Longitudinal Multiomics as a Possible Immune Evasion Mechanism in Glioma
- (2019) Takahide Nejo et al. Cancer Immunology Research
- Optimal clustering with missing values
- (2019) Shahin Boluki et al. BMC BIOINFORMATICS
- Analysis of Survival-Related lncRNA Landscape Identifies A Role for LINC01537 in Energy Metabolism and Lung Cancer Progression
- (2019) Wei Gong et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Noncoding RNAs in cancer therapy resistance and targeted drug development
- (2019) Wen-Tao Wang et al. Journal of Hematology & Oncology
- Genomic landscape and its correlations with tumor mutational burden, PD-L1 expression, and immune cells infiltration in Chinese lung squamous cell carcinoma
- (2019) Tao Jiang et al. Journal of Hematology & Oncology
- Single-Cell RNA Sequencing in Cancer: Lessons Learned and Emerging Challenges
- (2019) Mario L. Suvà et al. MOLECULAR CELL
- Subclonal cooperation drives metastasis by modulating local and systemic immune microenvironments
- (2019) Michalina Janiszewska et al. NATURE CELL BIOLOGY
- RNA sequencing: the teenage years
- (2019) Rory Stark et al. NATURE REVIEWS GENETICS
- Methylation and transcription patterns are distinct in IDH mutant gliomas compared to other IDH mutant cancers
- (2019) Dusten Unruh et al. Scientific Reports
- LINC01123, a c-Myc-activated long non-coding RNA, promotes proliferation and aerobic glycolysis of non-small cell lung cancer through miR-199a-5p/c-Myc axis
- (2019) Qian Hua et al. Journal of Hematology & Oncology
- Tumor neoantigens: from basic research to clinical applications
- (2019) Tao Jiang et al. Journal of Hematology & Oncology
- BORIS promotes chromatin regulatory interactions in treatment-resistant cancer cells
- (2019) David N. Debruyne et al. NATURE
- Selective inhibition of mutant IDH1 by DS-1001b ameliorates aberrant histone modifications and impairs tumor activity in chondrosarcoma
- (2019) Makoto Nakagawa et al. ONCOGENE
- Single-cell RNA sequencing reveals compartmental remodeling of tumor-infiltrating immune cells induced by anti-CD47 targeting in pancreatic cancer
- (2019) Yu Pan et al. Journal of Hematology & Oncology
- Delivery strategies of cancer immunotherapy: recent advances and future perspectives
- (2019) Zhongwei Zhao et al. Journal of Hematology & Oncology
- CircPAN3 contributes to drug resistance in acute myeloid leukemia through regulation of autophagy
- (2019) Jin Shang et al. LEUKEMIA RESEARCH
- Single-cell profiling guided combinatorial immunotherapy for fast-evolving CDK4/6 inhibitor-resistant HER2-positive breast cancer
- (2019) Qingfei Wang et al. Nature Communications
- Integration of ATAC-Seq and RNA-Seq Identifies Key Genes in Light-Induced Primordia Formation of Sparassis latifolia
- (2019) Chi Yang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Next-generation sequencing for BCR-ABL1 kinase domain mutation testing in patients with chronic myeloid leukemia: a position paper
- (2019) Simona Soverini et al. Journal of Hematology & Oncology
- Emerging insights of tumor heterogeneity and drug resistance mechanisms in lung cancer targeted therapy
- (2019) Zuan-Fu Lim et al. Journal of Hematology & Oncology
- Neopepsee: accurate genome-level prediction of neoantigens by harnessing sequence and amino acid immunogenicity information
- (2018) S Kim et al. ANNALS OF ONCOLOGY
- OUP accepted manuscript
- (2018) BIOINFORMATICS
- Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment
- (2018) Elham Azizi et al. CELL
- Gut microbiome modulates efficacy of immune checkpoint inhibitors
- (2018) Ming Yi et al. Journal of Hematology & Oncology
- Precision therapy for acute myeloid leukemia
- (2018) Xue Yang et al. Journal of Hematology & Oncology
- An Efficient Single-Cell RNA-Seq Approach to Identify Neoantigen-Specific T Cell Receptors
- (2018) Yong-Chen Lu et al. MOLECULAR THERAPY
- Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
- (2018) Alexander B. Rosenberg et al. SCIENCE
- Characterization of long non-coding RNAs and MEF2C-AS1 identified as a novel biomarker in diffuse gastric cancer
- (2018) Tianhang Luo et al. Translational Oncology
- Profiling and functional analysis of circular RNAs in acute promyelocytic leukemia and their dynamic regulation during all-trans retinoic acid treatment
- (2018) Shufen Li et al. Cell Death & Disease
- ACKR2 in hematopoietic precursors as a checkpoint of neutrophil release and anti-metastatic activity
- (2018) Matteo Massara et al. Nature Communications
- Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity
- (2018) Emelie Berglund et al. Nature Communications
- A RNA-Sequencing approach for the identification of novel long non-coding RNA biomarkers in colorectal cancer
- (2018) Atsushi Yamada et al. Scientific Reports
- Correlated non-nuclear COX2 and low HER2 expression confers a good prognosis in colorectal cancer
- (2018) Fei-fei Zhou et al. Saudi Journal of Gastroenterology
- A novel plasma circular RNA circFARSA is a potential biomarker for non-small cell lung cancer
- (2018) Dong Hang et al. Cancer Medicine
- Circular RNA Signature Predicts Gemcitabine Resistance of Pancreatic Ductal Adenocarcinoma
- (2018) Feng Shao et al. Frontiers in Pharmacology
- LC3-Associated Phagocytosis in Myeloid Cells Promotes Tumor Immune Tolerance
- (2018) Larissa D. Cunha et al. CELL
- Transcriptomic analysis reveals key lncRNAs associated with ribosomal biogenesis and epidermis differentiation in head and neck squamous cell carcinoma
- (2018) Yu-zhu Guo et al. Journal of Zhejiang University-SCIENCE B
- Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response
- (2018) Peng Jiang et al. NATURE MEDICINE
- Prognostic and clinicopathological significance of long noncoding RNA CTD-2510F5.4 in gastric cancer
- (2018) Zhe Wang et al. Gastric Cancer
- Recent updates in cancer immunotherapy: a comprehensive review and perspective of the 2018 China Cancer Immunotherapy Workshop in Beijing
- (2018) Zihai Li et al. Journal of Hematology & Oncology
- Single-nucleus and single-cell transcriptomes compared in matched cortical cell types
- (2018) Trygve E. Bakken et al. PLoS One
- Longitudinal single-cell RNA sequencing of patient-derived primary cells reveals drug-induced infidelity in stem cell hierarchy
- (2018) Ankur Sharma et al. Nature Communications
- Single-cell RNA-seq analysis reveals the platinum resistance gene COX7B and the surrogate marker CD63
- (2018) Nobuyuki Tanaka et al. Cancer Medicine
- Validation of a Targeted RNA Sequencing Assay for Kinase Fusion Detection in Solid Tumors
- (2017) Julie W. Reeser et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Platelet RNA as a circulating biomarker trove for cancer diagnostics
- (2017) M. G. Best et al. JOURNAL OF THROMBOSIS AND HAEMOSTASIS
- An immunogenic personal neoantigen vaccine for patients with melanoma
- (2017) Patrick A. Ott et al. NATURE
- Pooled CRISPR screening with single-cell transcriptome readout
- (2017) Paul Datlinger et al. NATURE METHODS
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq
- (2017) Jun Chen et al. Nature Protocols
- Cancer transcriptome profiling at the juncture of clinical translation
- (2017) Marcin Cieślik et al. NATURE REVIEWS GENETICS
- Comprehensive single-cell transcriptional profiling of a multicellular organism
- (2017) Junyue Cao et al. SCIENCE
- Novel lincRNA SLINKY is a prognostic biomarker in kidney cancer
- (2017) Xue Gong et al. Oncotarget
- Chromosome conformation and gene expression patterns differ profoundly in human fibroblasts grown in spheroids versus monolayers
- (2017) Haiming Chen et al. Nucleus
- Chromosome conformation and gene expression patterns differ profoundly in human fibroblasts grown in spheroids versus monolayers
- (2017) Haiming Chen et al. Nucleus
- Stable feature selection based on the ensemble L 1 -norm support vector machine for biomarker discovery
- (2016) Myungjin Moon et al. BMC GENOMICS
- Recurrent and pathological gene fusions in breast cancer: current advances in genomic discovery and clinical implications
- (2016) Jamunarani Veeraraghavan et al. BREAST CANCER RESEARCH AND TREATMENT
- Origin and Role of a Subset of Tumor-Associated Neutrophils with Antigen-Presenting Cell Features in Early-Stage Human Lung Cancer
- (2016) Sunil Singhal et al. CANCER CELL
- Hallmarks of Tissue-Resident Lymphocytes
- (2016) Xiying Fan et al. CELL
- Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq
- (2016) Diego Adhemar Jaitin et al. CELL
- MEF2D-BCL9 Fusion Gene Is Associated With High-Risk Acute B-Cell Precursor Lymphoblastic Leukemia in Adolescents
- (2016) Kyogo Suzuki et al. JOURNAL OF CLINICAL ONCOLOGY
- Alantolactone selectively ablates acute myeloid leukemia stem and progenitor cells
- (2016) Yahui Ding et al. Journal of Hematology & Oncology
- Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma
- (2016) Itay Tirosh et al. NATURE
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
- (2016) P. L. Stahl et al. SCIENCE
- Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade
- (2016) N. McGranahan et al. SCIENCE
- Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
- (2016) I. Tirosh et al. SCIENCE
- ISG15 predicts poor prognosis and promotes cancer stem cell phenotype in nasopharyngeal carcinoma
- (2016) Ren-Hui Chen et al. Oncotarget
- Potential diagnostic and prognostic marker dimethylglycine dehydrogenase (DMGDH) suppresses hepatocellular carcinoma metastasis in vitro and in vivo
- (2016) Gang Liu et al. Oncotarget
- Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade
- (2016) Tavi Nathanson et al. Cancer Immunology Research
- hybridSPAdes: an algorithm for hybrid assembly of short and long reads
- (2015) Dmitry Antipov et al. BIOINFORMATICS
- Immune Checkpoint Blockade: A Common Denominator Approach to Cancer Therapy
- (2015) Suzanne L. Topalian et al. CANCER CELL
- RNA-Seq of Tumor-Educated Platelets Enables Blood-Based Pan-Cancer, Multiclass, and Molecular Pathway Cancer Diagnostics
- (2015) Myron G. Best et al. CANCER CELL
- Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
- (2015) Evan Z. Macosko et al. CELL
- RNA-Seq SSRs and small RNA-Seq SSRs: New approaches in cancer biomarker discovery
- (2015) Arghavan Alisoltani et al. GENE
- Identification of the NUP98-PHF23 fusion gene in pediatric cytogenetically normal acute myeloid leukemia by whole-transcriptome sequencing
- (2015) Marco Togni et al. Journal of Hematology & Oncology
- Neutrophils support lung colonization of metastasis-initiating breast cancer cells
- (2015) Stefanie K. Wculek et al. NATURE
- Condensin-driven remodelling of X chromosome topology during dosage compensation
- (2015) Emily Crane et al. NATURE
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
- (2015) Borbala Mifsud et al. NATURE GENETICS
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Combination cancer immunotherapy and new immunomodulatory targets
- (2015) Kathleen M. Mahoney et al. NATURE REVIEWS DRUG DISCOVERY
- PD-1 Blockade in Tumors with Mismatch-Repair Deficiency
- (2015) Dung T. Le et al. NEW ENGLAND JOURNAL OF MEDICINE
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Nanopore Sequencing: From Imagination to Reality
- (2014) H. Bayley CLINICAL CHEMISTRY
- Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study
- (2014) Sheng Li et al. NATURE BIOTECHNOLOGY
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
- (2014) NATURE BIOTECHNOLOGY
- Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms
- (2014) Rob Patro et al. NATURE BIOTECHNOLOGY
- Targeted sequencing for gene discovery and quantification using RNA CaptureSeq
- (2014) Tim R Mercer et al. Nature Protocols
- Genetic Basis for Clinical Response to CTLA-4 Blockade in Melanoma
- (2014) Alexandra Snyder et al. NEW ENGLAND JOURNAL OF MEDICINE
- Defining a personal, allele-specific, and single-molecule long-read transcriptome
- (2014) Hagen Tilgner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma
- (2014) A. P. Patel et al. SCIENCE
- Highly Multiplexed Subcellular RNA Sequencing in Situ
- (2014) J. H. Lee et al. SCIENCE
- Next-Generation Sequencing Platforms
- (2013) Elaine R. Mardis Annual Review of Analytical Chemistry
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
- (2013) Alex K. Shalek et al. NATURE
- A single-molecule long-read survey of the human transcriptome
- (2013) Donald Sharon et al. NATURE BIOTECHNOLOGY
- In situ sequencing for RNA analysis in preserved tissue and cells
- (2013) Rongqin Ke et al. NATURE METHODS
- Systematic evaluation of spliced alignment programs for RNA-seq data
- (2013) Pär G Engström et al. NATURE METHODS
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Getting Personal with Neoantigen-Based Therapeutic Cancer Vaccines
- (2013) N. Hacohen et al. Cancer Immunology Research
- RNA-SeQC: RNA-seq metrics for quality control and process optimization
- (2012) David S. DeLuca et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- The transcriptional landscape and mutational profile of lung adenocarcinoma
- (2012) J.-S. Seo et al. GENOME RESEARCH
- Detecting differential usage of exons from RNA-seq data
- (2012) S. Anders et al. GENOME RESEARCH
- Streaming fragment assignment for real-time analysis of sequencing experiments
- (2012) Adam Roberts et al. NATURE METHODS
- NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
- (2012) Ravi K. Patel et al. PLoS One
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Targeted RNA sequencing reveals the deep complexity of the human transcriptome
- (2011) Tim R Mercer et al. NATURE BIOTECHNOLOGY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- From RNA-seq reads to differential expression results
- (2011) Alicia Oshlack et al. GENOME BIOLOGY
- A window into third-generation sequencing
- (2010) E. E. Schadt et al. HUMAN MOLECULAR GENETICS
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- De novo assembly and analysis of RNA-seq data
- (2010) Gordon Robertson et al. NATURE METHODS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- mRNA-Seq whole-transcriptome analysis of a single cell
- (2009) Fuchou Tang et al. NATURE METHODS
- The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
- (2009) Peter J. A. Cock et al. NUCLEIC ACIDS RESEARCH
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Next-Generation DNA Sequencing Methods
- (2008) Elaine R. Mardis Annual Review of Genomics and Human Genetics
- RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
- (2008) J. C. Marioni et al. GENOME RESEARCH
- Next-generation DNA sequencing
- (2008) Jay Shendure et al. NATURE BIOTECHNOLOGY
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now