Integration of ATAC-Seq and RNA-Seq Identifies Key Genes in Light-Induced Primordia Formation of Sparassis latifolia

A hydrophobin gene, Hyd9, plays an important role in the formation of aerial hyphae and primordia in Flammulina filiformis

(2019) Yongxin Tao et al.   GENE

Rapid Characterization of Chemical Components in Edible Mushroom Sparassis crispa by UPLC-Orbitrap MS Analysis and Potential Inhibitory Effects on Allergic Rhinitis

(2019) Zhixin Wang et al.   MOLECULES

Sparassis crispa Intake Improves the Reduced Lipopolysaccharide-Induced TNF-α Production That Occurs upon Exhaustive Exercise in Mice

(2019) Masataka Uchida et al.   Nutrients

De Novo Sequencing of a Sparassis latifolia Genome and Its Associated Comparative Analyses

(2018) Donglai Xiao et al.   Canadian Journal of Infectious Diseases & Medical Microbiology

De novo transcriptomic analysis during Lentinula edodes fruiting body growth

(2018) Yingzhu Wang et al.   GENE

Comparative transcriptomics of Pleurotus eryngii reveals blue-light regulation of carbohydrate-active enzymes (CAZymes) expression at primordium differentiated into fruiting body stage

(2018) Chunliang Xie et al.   GENOMICS

Effects of Sparassis crispa in Medical Therapeutics: A Systematic Review and Meta-Analysis of Randomized Controlled Trials

(2018) Le Thi Nhu Ngoc et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comparative transcriptome analysis of dikaryotic mycelia and mature fruiting bodies in the edible mushroom Lentinula edodes

(2018) Ha-Yeon Song et al.   Scientific Reports

Genome sequence of the cauliflower mushroom Sparassis crispa (Hanabiratake) and its association with beneficial usage

(2018) Ryoiti Kiyama et al.   Scientific Reports

A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of aging yeast

(2018) David G Hendrickson et al.   eLife

The mitogen-activated protein kinase GlSlt2 regulates fungal growth, fruiting body development, cell wall integrity, oxidative stress and ganoderic acid biosynthesis in Ganoderma lucidum

(2017) Guang Zhang et al.   FUNGAL GENETICS AND BIOLOGY

Comparative Proteome Reveals Metabolic Changes during the Fruiting Process in Flammulina velutipes

(2017) Jing-yu Liu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

MNase-Sensitive Complexes in Yeast: Nucleosomes and Non-histone Barriers

(2017) Răzvan V. Chereji et al.   MOLECULAR CELL

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

(2017) M Ryan Corces et al.   NATURE METHODS

Comparative Transcriptome Analysis Identified Candidate Genes Related to Bailinggu Mushroom Formation and Genetic Markers for Genetic Analyses and Breeding

(2017) Yongping Fu et al.   Scientific Reports

Differential Expression Patterns of Pleurotus ostreatus Catalase Genes during Developmental Stages and under Heat Stress

(2017) Lining Wang et al.   Genes

Further characterization of hydrophobin genes in genome of Flammulina velutipes

(2016) Hong-Il Kim et al.   MYCOSCIENCE

Production of liquid spawn of an edible mushroom, Sparassis latifolia by submerged fermentation and mycelial growth on pine wood sawdust

(2016) Lu Ma et al.   SCIENTIA HORTICULTURAE

The blue-light receptor CmWC-1 mediates fruit body development and secondary metabolism in Cordyceps militaris

(2015) Tao Yang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Cloning and functional analysis of a laccase gene during fruiting body formation in Hypsizygus marmoreus

(2015) Jinjing Zhang et al.   MICROBIOLOGICAL RESEARCH

Transcriptome Analysis and Its Application in Identifying Genes Associated with Fruiting Body Development in Basidiomycete Hypsizygus marmoreus

(2015) Jinjing Zhang et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Comparative transcriptomics of the model mushroom Coprinopsis cinerea reveals tissue-specific armories and a conserved circuitry for sexual development

(2014) David Plaza et al.   BMC GENOMICS

Photo morphogenesis and photo response of the blue-light receptor geneCmwc-1in different strains ofCordyceps militaris

(2014) Tao Yang et al.   FEMS MICROBIOLOGY LETTERS

Transcriptome analysis of candidate genes and signaling pathways associated with light-induced brown film formation in Lentinula edodes

(2013) Li-hua Tang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea

(2013) Chi Keung Cheng et al.   BMC GENOMICS

Cloning and analysis of the Oswc-1 gene encoding a putative blue light photoreceptor from Ophiocordyceps sinensis

(2013) Tao Yang et al.   MYCOSCIENCE

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Use of Chinese medicine by cancer patients: a review of surveys

(2011) Bridget Carmady et al.   Chinese Medicine

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Genome sequence of the model mushroom Schizophyllum commune

(2010) Robin A Ohm et al.   NATURE BIOTECHNOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY

Hydrophobins Sc3 and Sc4 gene expression in mounds, fruiting bodies and vegetative hyphae of Schizophyllum commune

(2007) Goutami Banerjee et al.   FUNGAL GENETICS AND BIOLOGY