New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2020-07-02
DOI
10.1093/nar/gkaa588
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Direct full-length RNA sequencing reveals unexpected transcriptome complexity during Caenorhabditis elegans development
- (2020) Runsheng Li et al. GENOME RESEARCH
- Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification
- (2020) Matthew T Parker et al. eLife
- Cell wall invertase is essential for ovule development through sugar signaling rather than provision of carbon
- (2020) Shengjin Liao et al. PLANT PHYSIOLOGY
- Analysis of Transcriptome and Epitranscriptome in Plants Using PacBio Iso-Seq and Nanopore-Based Direct RNA Sequencing
- (2019) Liangzhen Zhao et al. Frontiers in Genetics
- Eukaryotic 5-methylcytosine (m5C) RNA Methyltransferases: Mechanisms, Cellular Functions, and Links to Disease
- (2019) Katherine Bohnsack et al. Genes
- Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen
- (2019) Daniel P. Depledge et al. Nature Communications
- Nanopore ultra-long read sequencing technology for antimicrobial resistance detection in Mannheimia haemolytica
- (2019) Alexander Lim et al. JOURNAL OF MICROBIOLOGICAL METHODS
- A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes
- (2019) Charlotte Soneson et al. Nature Communications
- m5C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants
- (2019) Lei Yang et al. CURRENT BIOLOGY
- Nanopore native RNA sequencing of a human poly(A) transcriptome
- (2019) Rachael E. Workman et al. NATURE METHODS
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- EnrichedHeatmap: an R/Bioconductor package for comprehensive visualization of genomic signal associations
- (2018) Zuguang Gu et al. BMC GENOMICS
- Modifications and functional genomics of human transfer RNA
- (2018) Tao Pan CELL RESEARCH
- Highly parallel direct RNA sequencing on an array of nanopores
- (2018) Daniel R Garalde et al. NATURE METHODS
- Elucidation of the Mechanisms of Long-Distance mRNA Movement in aNicotiana benthamiana/Tomato Heterograft System
- (2018) Chao Xia et al. PLANT PHYSIOLOGY
- High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
- (2018) Todd P. Michael et al. Nature Communications
- Cellular stress alters 3′UTR landscape through alternative polyadenylation and isoform-specific degradation
- (2018) Dinghai Zheng et al. Nature Communications
- Histone Deacetylase AtSRT1 Links Metabolic Flux and Stress Response in Arabidopsis
- (2017) Xiaoyun Liu et al. Molecular Plant
- 5-Methylcytosine RNA Methylation in Arabidopsis Thaliana
- (2017) Xuean Cui et al. Molecular Plant
- Transcriptome-Wide Mapping of RNA 5-Methylcytosine in Arabidopsis mRNAs and Noncoding RNAs
- (2017) Rakesh David et al. PLANT CELL
- Araport11: a complete reannotation of theArabidopsis thalianareference genome
- (2017) Chia-Yi Cheng et al. PLANT JOURNAL
- Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs
- (2017) Shawn M. Lyons et al. Nature Communications
- Coming of age: ten years of next-generation sequencing technologies
- (2016) Sara Goodwin et al. NATURE REVIEWS GENETICS
- PlaMoM: a comprehensive database compiles plant mobile macromolecules
- (2016) Daogang Guan et al. NUCLEIC ACIDS RESEARCH
- tRNA-Related Sequences Trigger Systemic mRNA Transport in Plants
- (2016) Wenna Zhang et al. PLANT CELL
- SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways
- (2014) Juan Yu et al. BMC GENOMICS
- Poly(A)-tail profiling reveals an embryonic switch in translational control
- (2014) Alexander O. Subtelny et al. NATURE
- Unique features of the m6A methylome in Arabidopsis thaliana
- (2014) Guan-Zheng Luo et al. Nature Communications
- Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
- (2014) Peng Cui et al. GENOME BIOLOGY
- Alternative cleavage and polyadenylation: extent, regulation and function
- (2013) Ran Elkon et al. NATURE REVIEWS GENETICS
- Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation
- (2012) Alexander Sherstnev et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation
- (2011) X. Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: prevalence and possible functional roles
- (2010) Melissa A. Mullen et al. NUCLEIC ACIDS RESEARCH
- Control of poly(A) tail length
- (2010) Christian R. Eckmann et al. Wiley Interdisciplinary Reviews-RNA
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- The Phloem-Delivered RNA Pool Contains Small Noncoding RNAs and Interferes with Translation
- (2009) S. Zhang et al. PLANT PHYSIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More