Integration of ATAC-seq and RNA-seq Unravels Chromatin Accessibility during Sex Reversal in Orange-Spotted Grouper (Epinephelus coioides)
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Title
Integration of ATAC-seq and RNA-seq Unravels Chromatin Accessibility during Sex Reversal in Orange-Spotted Grouper (Epinephelus coioides)
Authors
Keywords
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Journal
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Volume 21, Issue 8, Pages 2800
Publisher
MDPI AG
Online
2020-04-21
DOI
10.3390/ijms21082800
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- (2018) Brian Tung et al. BMC CANCER
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- (2016) Shenglin Mei et al. NUCLEIC ACIDS RESEARCH
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- (2016) Hongyan Qian et al. Journal of Immunology Research
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- (2016) Amanda M. Ackermann et al. Molecular Metabolism
- Dazl is a critical player for primordial germ cell formation in medaka
- (2016) Mingyou Li et al. Scientific Reports
- ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
- (2015) Guangchuang Yu et al. BIOINFORMATICS
- Wnt4 in protogynous hermaphroditic orange-spotted grouper (Epinephelus coioides): Identification and expression
- (2015) Huapu Chen et al. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY
- Sexual Fate Reprogramming in the Steroid-Induced Bi-Directional Sex Change in the Protogynous Orange-Spotted Grouper, Epinephelus coioides
- (2015) Guan-Chung Wu et al. PLoS One
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- (2014) Narayani Bhat et al. GENE
- The complete mitochondrial genome of the orange-spotted grouper Epinephelus coioides (Perciformes, Serranidae)
- (2014) Huirong Yang et al. Mitochondrial DNA
- KRAB-Zinc Finger Proteins: A Repressor Family Displaying Multiple Biological Functions
- (2013) Angelo Lupo et al. CURRENT GENOMICS
- Activation of early phase of adipogenesis through Krüppel-like factor KLF9-mediated, enhanced expression of CCAAT/enhancer-binding protein β in 3T3-L1 cells
- (2013) Hiroko Kimura et al. GENE
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Measuring reproducibility of high-throughput experiments
- (2011) Qunhua Li et al. Annals of Applied Statistics
- A second form of Sox11 homologue identified in the orange-spotted grouper Epinephelus coioides: Analysis of sequence and mRNA expression patterns
- (2010) Lihong Zhang et al. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY
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- (2010) Housheng Hansen He et al. NATURE GENETICS
- Genomic Targets of the KRAB and SCAN Domain-containing Zinc Finger Protein 263
- (2009) Seth Frietze et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- ChIP–seq: advantages and challenges of a maturing technology
- (2009) Peter J. Park NATURE REVIEWS GENETICS
- Cortisol-Induced Masculinization: Does Thermal Stress Affect Gonadal Fate in Pejerrey, a Teleost Fish with Temperature-Dependent Sex Determination?
- (2009) Ricardo S. Hattori et al. PLoS One
- Gonad development during sexual differentiation in hatchery-produced orange-spotted grouper (Epinephelus coioides) and humpback grouper (Cromileptes altivelis) (Pisces: Serranidae, Epinephelinae)
- (2008) Min Liu et al. AQUACULTURE
- Molecular mechanisms underlying sex change in hermaphroditic groupers
- (2008) Li Zhou et al. FISH PHYSIOLOGY AND BIOCHEMISTRY
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
- A homologue of Sox11 predominantly expressed in the ovary of the orange-spotted grouper Epinephelus coioides
- (2007) Lihong Zhang et al. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY
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