Targeted sequencing for gene discovery and quantification using RNA CaptureSeq
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Targeted sequencing for gene discovery and quantification using RNA CaptureSeq
Authors
Keywords
-
Journal
Nature Protocols
Volume 9, Issue 5, Pages 989-1009
Publisher
Springer Nature America, Inc
Online
2014-04-05
DOI
10.1038/nprot.2014.058
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Comparative analysis of RNA sequencing methods for degraded or low-input samples
- (2013) Xian Adiconis et al. NATURE METHODS
- Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
- (2013) Simon Anders et al. Nature Protocols
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- RNA-SeQC: RNA-seq metrics for quality control and process optimization
- (2012) David S. DeLuca et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- iReckon: Simultaneous isoform discovery and abundance estimation from RNA-seq data
- (2012) A. M. Mezlini et al. GENOME RESEARCH
- Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
- (2012) C. Howald et al. GENOME RESEARCH
- Detecting differential usage of exons from RNA-seq data
- (2012) S. Anders et al. GENOME RESEARCH
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Differential analysis of gene regulation at transcript resolution with RNA-seq
- (2012) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
- (2011) M. N. Cabili et al. GENES & DEVELOPMENT
- Synthetic spike-in standards for RNA-seq experiments
- (2011) L. Jiang et al. GENOME RESEARCH
- Somatic retrotransposition alters the genetic landscape of the human brain
- (2011) J. Kenneth Baillie et al. NATURE
- Targeted RNA sequencing reveals the deep complexity of the human transcriptome
- (2011) Tim R Mercer et al. NATURE BIOTECHNOLOGY
- Performance comparison of exome DNA sequencing technologies
- (2011) Michael J Clark et al. NATURE BIOTECHNOLOGY
- Comprehensive qPCR profiling of gene expression in single neuronal cells
- (2011) Ami Citri et al. Nature Protocols
- Next-generation transcriptome assembly
- (2011) Jeffrey A. Martin et al. NATURE REVIEWS GENETICS
- Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
- (2011) Martin Kircher et al. NUCLEIC ACIDS RESEARCH
- Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation
- (2011) J. J. Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Target-enrichment strategies for next-generation sequencing
- (2010) Lira Mamanova et al. NATURE METHODS
- Comprehensive comparative analysis of strand-specific RNA sequencing methods
- (2010) Joshua Z Levin et al. NATURE METHODS
- RNA sequencing: advances, challenges and opportunities
- (2010) Fatih Ozsolak et al. NATURE REVIEWS GENETICS
- Detection of splice junctions from paired-end RNA-seq data by SpliceMap
- (2010) K. F. Au et al. NUCLEIC ACIDS RESEARCH
- lncRNAdb: a reference database for long noncoding RNAs
- (2010) Paulo P. Amaral et al. NUCLEIC ACIDS RESEARCH
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- Methods for Genomic Partitioning
- (2009) Emily H. Turner et al. Annual Review of Genomics and Human Genetics
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- How to do successful gene expression analysis using real-time PCR
- (2009) Stefaan Derveaux et al. METHODS
- Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human
- (2009) Kun Zhang et al. NATURE METHODS
- Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing
- (2009) J. B. Li et al. SCIENCE
- Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts
- (2009) Joshua Z Levin et al. GENOME BIOLOGY
- Stem cell transcriptome profiling via massive-scale mRNA sequencing
- (2008) Nicole Cloonan et al. NATURE METHODS
- Identification of genetic variants using bar-coded multiplexed sequencing
- (2008) David W Craig et al. NATURE METHODS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- The UCSC Genome Browser Database: update 2009
- (2008) R. M. Kuhn et al. NUCLEIC ACIDS RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now