- Home
- Publications
- Publication Search
- Publication Details
Title
Microbial interactions: from networks to models
Authors
Keywords
-
Journal
NATURE REVIEWS MICROBIOLOGY
Volume 10, Issue 8, Pages 538-550
Publisher
Springer Nature
Online
2012-07-16
DOI
10.1038/nrmicro2832
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A framework for human microbiome research
- (2012) NATURE
- OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities
- (2012) Ali R. Zomorrodi et al. PLoS Computational Biology
- Advancing analytical algorithms and pipelines for billions of microbial sequences
- (2011) Antonio Gonzalez et al. CURRENT OPINION IN BIOTECHNOLOGY
- Marine bacterial, archaeal and protistan association networks reveal ecological linkages
- (2011) Joshua A Steele et al. ISME Journal
- Defining seasonal marine microbial community dynamics
- (2011) Jack A Gilbert et al. ISME Journal
- Using network analysis to explore co-occurrence patterns in soil microbial communities
- (2011) Albert Barberán et al. ISME Journal
- Coherent dynamics and association networks among lake bacterioplankton taxa
- (2011) Alexander Eiler et al. ISME Journal
- Intestinal homeostasis and its breakdown in inflammatory bowel disease
- (2011) Kevin J. Maloy et al. NATURE
- Enterotypes of the human gut microbiome
- (2011) Manimozhiyan Arumugam et al. NATURE
- Microdroplet-Enabled Highly Parallel Co-Cultivation of Microbial Communities
- (2011) Jihyang Park et al. PLoS One
- Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging
- (2011) A. M. Valm et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Predicting a Human Gut Microbiota's Response to Diet in Gnotobiotic Mice
- (2011) J. J. Faith et al. SCIENCE
- Synthetic Biology Moving into the Clinic
- (2011) W. C. Ruder et al. SCIENCE
- Detecting Novel Associations in Large Data Sets
- (2011) D. N. Reshef et al. SCIENCE
- Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
- (2011) G. D. Wu et al. SCIENCE
- Prospects for systems biology and modeling of the gut microbiome
- (2011) Fredrik H. Karlsson et al. TRENDS IN BIOTECHNOLOGY
- The Unified Neutral Theory of Biodiversity and Biogeography at Age Ten
- (2011) James Rosindell et al. TRENDS IN ECOLOGY & EVOLUTION
- Competitive and cooperative metabolic interactions in bacterial communities
- (2011) Shiri Freilich et al. Nature Communications
- Moving pictures of the human microbiome
- (2011) J Gregory Caporaso et al. GENOME BIOLOGY
- Use of Ichip for High-Throughput In Situ Cultivation of "Uncultivable" Microbial Species
- (2010) D. Nichols et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Microbial Community Development in a Dynamic Gut Model Is Reproducible, Colon Region Specific, and Selective for Bacteroidetes and Clostridium Cluster IX
- (2010) P. Van den Abbeele et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Cytoscape 2.8: new features for data integration and network visualization
- (2010) M. E. Smoot et al. BIOINFORMATICS
- Dynamic flux balance modeling of microbial co-cultures for efficient batch fermentation of glucose and xylose mixtures
- (2010) Timothy J. Hanly et al. BIOTECHNOLOGY AND BIOENGINEERING
- Revealing ecological networks using Bayesian network inference algorithms
- (2010) Isobel Milns et al. ECOLOGY
- A global network of coexisting microbes from environmental and whole-genome sequence data
- (2010) S. Chaffron et al. GENOME RESEARCH
- Complex function by design using spatially pre-structured synthetic microbial communities: degradation of pentachlorophenol in the presence of Hg(ii)
- (2010) Hyun Jung Kim et al. Integrative Biology
- Viral and microbial community dynamics in four aquatic environments
- (2010) Beltran Rodriguez-Brito et al. ISME Journal
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Microbial community resemblance methods differ in their ability to detect biologically relevant patterns
- (2010) Justin Kuczynski et al. NATURE METHODS
- The large-scale organization of the bacterial network of ecological co-occurrence interactions
- (2010) Shiri Freilich et al. NUCLEIC ACIDS RESEARCH
- The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
- (2010) D. Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
- (2010) Jenna L. Morgan et al. PLoS One
- Vaginal microbiome of reproductive-age women
- (2010) J. Ravel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Succession of microbial consortia in the developing infant gut microbiome
- (2010) J. E. Koenig et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Changes through time: integrating microorganisms into the study of succession
- (2010) Noah Fierer et al. RESEARCH IN MICROBIOLOGY
- Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
- (2009) M. Hamady et al. GENOME RESEARCH
- Convergent temporal dynamics of the human infant gut microbiota
- (2009) Pål Trosvik et al. ISME Journal
- The powerful law of the power law and other myths in network biology
- (2009) Gipsi Lima-Mendez et al. Molecular BioSystems
- Network inference and network response identification: moving genome-scale data to the next level of biological discovery
- (2009) Diogo F. T. Veiga et al. Molecular BioSystems
- Microbial community structure and its functional implications
- (2009) Jed A. Fuhrman NATURE
- VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology
- (2009) Zhenjun Hu et al. NUCLEIC ACIDS RESEARCH
- Bacterial Community Variation in Human Body Habitats Across Space and Time
- (2009) E. K. Costello et al. SCIENCE
- The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice
- (2009) P. J. Turnbaugh et al. Science Translational Medicine
- Community structure of marine bacterioplankton: patterns, networks, and relationships to function
- (2008) JA Fuhrman et al. AQUATIC MICROBIAL ECOLOGY
- Gene regulatory network inference: Data integration in dynamic models—A review
- (2008) Michael Hecker et al. BIOSYSTEMS
- Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome
- (2008) Peter J. Turnbaugh et al. Cell Host & Microbe
- A synthetic Escherichia coli predator–prey ecosystem
- (2008) Frederick K Balagaddé et al. Molecular Systems Biology
- Molecular eco-systems biology: towards an understanding of community function
- (2008) Jeroen Raes et al. NATURE REVIEWS MICROBIOLOGY
- NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
- (2008) S. Brohee et al. NUCLEIC ACIDS RESEARCH
- The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
- (2008) J. R. Cole et al. NUCLEIC ACIDS RESEARCH
- The Microbial Engines That Drive Earth's Biogeochemical Cycles
- (2008) P. G. Falkowski et al. SCIENCE
- Graph Clustering Via a Discrete Uncoupling Process
- (2008) Stijn Van Dongen SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now