Differential sharing and distinct co-occurrence networks among spatially close bacterial microbiota of bark, mosses and lichens‬‬

Contribution of Vegetation to the Microbial Composition of Nearby Outdoor Air

(2016) Despoina S. Lymperopoulou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Basidiomycete yeasts in the cortex of ascomycete macrolichens

(2016) Toby Spribille et al.   SCIENCE

Cyanobacterial gardens: the liverwortFrullania asagrayanaacts as a reservoir of lichen photobionts

(2016) Carolina Cornejo et al.   Environmental Microbiology Reports

Tree phyllosphere bacterial communities: exploring the magnitude of intra- and inter-individual variation among host species

(2016) Isabelle Laforest-Lapointe et al.   PeerJ

Plant community richness and microbial interactions structure bacterial communities in soil

(2015) Daniel C. Schlatter et al.   ECOLOGY

Mapping tree density at a global scale

(2015) T. W. Crowther et al.   NATURE

Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L.

(2015) Armin Erlacher et al.   Frontiers in Microbiology

Analyzing the antagonistic potential of the lichen microbiome against pathogens by bridging metagenomic with culture studies

(2015) Tomislav Cernava et al.   Frontiers in Microbiology

A novel assay for the detection of bioactive volatiles evaluated by screening of lichen-associated bacteria

(2015) Tomislav Cernava et al.   Frontiers in Microbiology

Seasonal variation of bacterial endophytes in urban trees

(2015) Shu Yi Shen et al.   Frontiers in Microbiology

Microbial cargo: do bacteria on symbiotic propagules reinforce the microbiome of lichens?

(2014) Ines Aline Aschenbrenner et al.   ENVIRONMENTAL MICROBIOLOGY

Spatial structuring of bacterial communities within individualGinkgo bilobatrees

(2014) Jonathan W. Leff et al.   ENVIRONMENTAL MICROBIOLOGY

Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics

(2014) Martin Grube et al.   ISME Journal

TheSphagnummicrobiome supports bog ecosystem functioning under extreme conditions

(2014) Anastasia Bragina et al.   MOLECULAR ECOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Unraveling the plant microbiome: looking back and future perspectives

(2014) Gabriele Berg et al.   Frontiers in Microbiology

New morphological aspects of cephalodium formation in the lichen Lobaria pulmonaria (Lecanorales, Ascomycota)

(2013) Carolina CORNEJO et al.   LICHENOLOGIST

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Vertical transmission explains the specific Burkholderia pattern in Sphagnum mosses at multi-geographic scale

(2013) Anastasia Bragina et al.   Frontiers in Microbiology

Molecular studies on cyanobacterial diversity in lichen symbioses

(2013) Jouko Rikkinen   MycoKeys

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Bacterial Diversity across Individual Lichens

(2011) Alexandra A. Mushegian et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome

(2011) Brendan P. Hodkinson et al.   ENVIRONMENTAL MICROBIOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Sphagnum mosses harbour highly specific bacterial diversity during their whole lifecycle

(2011) Anastasia Bragina et al.   ISME Journal

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Culturable bacteria in hydroponic cultures of moss Racomitrium japonicum and their potential as biofertilizers for moss production

(2011) Akio Tani et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia

(2011) Zulma Rocío Suárez-Moreno et al.   MICROBIAL ECOLOGY

The advantage of growing on moss: facilitative effects on photosynthetic performance and growth in the cyanobacterial lichen Peltigera rufescens

(2011) Claudia Colesie et al.   OECOLOGIA

Old trees contribute bio-available nitrogen through canopy bryophytes

(2011) Zoë Lindo et al.   PLANT AND SOIL

Bacterial Communities Associated with the Lichen Symbiosis

(2010) Scott T. Bates et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial metacommunities in the lichen-rock habitat

(2010) Torbjørg Bjelland et al.   Environmental Microbiology Reports

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Species-specific structural and functional diversity of bacterial communities in lichen symbioses

(2009) Martin Grube et al.   ISME Journal

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Universal and species-specific bacterial ‘fungiphiles’ in the mycospheres of different basidiomycetous fungi

(2008) J. A. Warmink et al.   ENVIRONMENTAL MICROBIOLOGY

In situ analysis of the bacterial community associated with the reindeer lichen Cladonia arbuscula reveals predominance of Alphaproteobacteria

(2008) Massimiliano Cardinale et al.   FEMS MICROBIOLOGY ECOLOGY

Mucilaginibacter kameinonensis sp., nov., isolated from garden soil

(2008) M. Urai et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY