Fungal guilds are evenly distributed along a vertical spruce forest soil profile while individual fungi show pronounced niche partitioning

Transient leaf endophytes are the most active fungi in 1-year-old beech leaf litter

(2017) Marco Alexandre Guerreiro et al.   FUNGAL DIVERSITY

Flooding Duration Affects the Structure of Terrestrial and Aquatic Microbial Eukaryotic Communities

(2017) Oliver Röhl et al.   MICROBIAL ECOLOGY

Distinct sensitivity of fungal freshwater guilds to water quality

(2017) Oliver Röhl et al.   MYCOLOGICAL PROGRESS

The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter: Fourteen years on

(2017) Ingrid Kögel-Knabner   SOIL BIOLOGY & BIOCHEMISTRY

Microbial carbon use efficiency: accounting for population, community, and ecosystem-scale controls over the fate of metabolized organic matter

(2016) Kevin M. Geyer et al.   BIOGEOCHEMISTRY

Ectomycorrhizal fungi slow soil carbon cycling

(2016) Colin Averill et al.   ECOLOGY LETTERS

Mycorrhizal and saprotrophic fungal guilds compete for the same organic substrates but affect decomposition differently

(2016) Inga T. M. Bödeker et al.   FUNCTIONAL ECOLOGY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Yeast diversity and species recovery rates from beech forest soils

(2016) Andrey M. Yurkov et al.   MYCOLOGICAL PROGRESS

Managing uncertainty in soil carbon feedbacks to climate change

(2016) Mark A. Bradford et al.   Nature Climate Change

Enzymatic Strategies and Carbon Use Efficiency of a Litter-Decomposing Fungus Grown on Maize Leaves, Stems, and Roots

(2016) Gwenaëlle Lashermes et al.   Frontiers in Microbiology

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Plant-associated fungal communities in the light of meta’omics

(2015) Derek Peršoh   FUNGAL DIVERSITY

The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts

(2015) Subashini C. Jayasiri et al.   FUNGAL DIVERSITY

Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities

(2015) László G. Nagy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

(2015) Annegret Kohler et al.   NATURE GENETICS

Competitive avoidance not edaphic specialization drives vertical niche partitioning among sister species of ectomycorrhizal fungi

(2015) Alija B. Mujic et al.   NEW PHYTOLOGIST

Revisiting the ‘Gadgil effect’: do interguild fungal interactions control carbon cycling in forest soils?

(2015) Christopher W. Fernandez et al.   NEW PHYTOLOGIST

Long-term litter decomposition controlled by manganese redox cycling

(2015) Marco Keiluweit et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015) Aleksej Zelezniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decomposition by ectomycorrhizal fungi alters soil carbon storage in a simulation model

(2015) J. A. M. Moore et al.   Ecosphere

Cross-biome comparison of microbial association networks

(2015) Karoline Faust et al.   Frontiers in Microbiology

Fine root longevity and carbon input into soil from below- and aboveground litter in climatically contrasting forests

(2014) Jaana Leppälammi-Kujansuu et al.   FOREST ECOLOGY AND MANAGEMENT

The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems

(2014) Christos Gougoulias et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage

(2014) Colin Averill et al.   NATURE

Local-scale biogeography and spatiotemporal variability in communities of mycorrhizal fungi

(2014) Mohammad Bahram et al.   NEW PHYTOLOGIST

Ectomycorrhizal fungi - potential organic matter decomposers, yet not saprotrophs

(2014) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Distribution of cutin and suberin biomarkers under forest trees with different root systems

(2014) Sandra Spielvogel et al.   PLANT AND SOIL

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Adjustment of microbial nitrogen use efficiency to carbon:nitrogen imbalances regulates soil nitrogen cycling

(2014) Maria Mooshammer et al.   Nature Communications

A first comprehensive census of fungi in soil reveals both hyperdiversity and fine-scale niche partitioning

(2013) D. Lee Taylor et al.   ECOLOGICAL MONOGRAPHS

Structural and functional variation in soil fungal communities associated with litter bags containing maize leaf

(2013) Eiko E. Kuramae et al.   FEMS MICROBIOLOGY ECOLOGY

Factors shaping community structure of endophytic fungi–evidence from the Pinus-Viscum-system

(2013) Derek Peršoh   FUNGAL DIVERSITY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Fine-scale diversity and distribution of ectomycorrhizal fungal mycelium in a Scots pine forest

(2013) Ian C. Anderson et al.   NEW PHYTOLOGIST

Seasonal dynamics of fungal communities in a temperate oak forest soil

(2013) Jana Voříšková et al.   NEW PHYTOLOGIST

Root and dissolved organic carbon controls on subsurface soil carbon dynamics: A model approach

(2013) Masakazu Ota et al.   Journal of Geophysical Research-Biogeosciences

Ultrafast clustering algorithms for metagenomic sequence analysis

(2012) W. Li et al.   BRIEFINGS IN BIOINFORMATICS

Peeking through a frosty window: molecular insights into the ecology of Arctic soil fungi

(2012) Ina Timling et al.   Fungal Ecology

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Fungal community composition shifts along a leaf degradation gradient in a European beech forest

(2012) Derek Peršoh et al.   PLANT AND SOIL

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Enzyme activities of fungi associated with Picea abies needles

(2011) Lucia Žifčáková et al.   Fungal Ecology

Assessment of yeast diversity in soils under different management regimes

(2011) A.M. Yurkov et al.   Fungal Ecology

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Fine root dynamics in 60-year-old stands of Fagus sylvatica and Picea abies growing on haplic luvisol soil

(2010) Raphael Mainiero et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

Response of recalcitrant soil substances to reduced N deposition in a spruce forest soil: integrating laccase-encoding genes and lignin decomposition

(2010) Susanne Theuerl et al.   FEMS MICROBIOLOGY ECOLOGY

Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition

(2010) Jaroslav Šnajdr et al.   FEMS MICROBIOLOGY ECOLOGY

First fungal community analyses of endophytic ascomycetes associated with Viscum album ssp. austriacum and its host Pinus sylvestris

(2010) Derek Peršoh et al.   Fungal Biology

Lignin-modifying enzymes in filamentous basidiomycetes - ecological, functional and phylogenetic review

(2010) Taina K. Lundell et al.   JOURNAL OF BASIC MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Recent (

(2010) Christiane Kramer et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fate of lignins in soils: A review

(2010) Mathieu Thevenot et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial biomass and enzyme activities under reduced nitrogen deposition in a spruce forest soil

(2009) Esther Enowashu et al.   APPLIED SOIL ECOLOGY

Slow response of soil organic matter to the reduction in atmospheric nitrogen deposition in a Norway spruce forest

(2009) NICOLE DÖRR et al.   GLOBAL CHANGE BIOLOGY

Fine root dynamics in a Norway spruce forest (Picea abies (L.) Karst) in eastern Sweden

(2009) Hans Å. Persson et al.   PLANT AND SOIL

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

Temporal Changes in the Ectomycorrhizal Community in Two Soil Horizons of a Temperate Oak Forest

(2008) P.-E. Courty et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Response of total and nitrate-dissimilating bacteria to reduced N deposition in a spruce forest soil profile

(2008) Ellen Kandeler et al.   FEMS MICROBIOLOGY ECOLOGY

Towards a universally adaptable method for quantitative extraction of high-purity nucleic acids from soil

(2008) Derek Peršoh et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Phylogeny and Ecophysiology of Opportunistic “Snow Molds” from a Subalpine Forest Ecosystem

(2008) S. K. Schmidt et al.   MICROBIAL ECOLOGY