High-throughput proteomic profiling of the fish liver following bacterial infection

Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature

(2018) Waldo G. Nuez-Ortín et al.   BMC GENOMICS

Characterisation of rainbow trout peripheral blood leucocytes prepared by hypotonic lysis of erythrocytes, and analysis of their phagocytic activity, proliferation and response to PAMPs and proinflammatory cytokines

(2018) Yehfang Hu et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Growth hormone transgenesis in coho salmon disrupts muscle immune function impacting cross-talk with growth systems

(2018) Abdullah Alzaid et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growth

(2018) Dwight R. Causey et al.   Journal of Proteomics

 Innate and adaptive immunity in teleost fish: a review

(2018) C. Uribe et al.   VETERINARNI MEDICINA

Label-free proteomic analysis of intestinal mucosa proteins in common carp ( Cyprinus carpio ) infected with Aeromonas hydrophila

(2017) Guilan Di et al.   FISH & SHELLFISH IMMUNOLOGY

Phylogeny and expression analysis of C-reactive protein ( CRP ) and serum amyloid-P ( SAP ) like genes reveal two distinct groups in fish

(2017) P.T. Lee et al.   FISH & SHELLFISH IMMUNOLOGY

Evaluation of three recombinant outer membrane proteins, OmpA1, Tdr, and TbpA, as potential vaccine antigens against virulent Aeromonas hydrophila infection in channel catfish ( Ictalurus punctatus )

(2017) Hossam Abdelhamed et al.   FISH & SHELLFISH IMMUNOLOGY

Label-Free Shotgun Proteomics Approach to Characterize Muscle Tissue from Farmed and Wild European Sea Bass (Dicentrarchus labrax)

(2017) Riccardo Zenezini Chiozzi et al.   Food Analytical Methods

STEAP4: its emerging role in metabolism and homeostasis of cellular iron and copper

(2017) Rachel T Scarl et al.   JOURNAL OF ENDOCRINOLOGY

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Non-traditional roles of complement in type 2 diabetes: Metabolism, insulin secretion and homeostasis

(2017) Ben C. King et al.   MOLECULAR IMMUNOLOGY

Macrophage Inducible C-Type Lectin As a Multifunctional Player in Immunity

(2017) Emmanuel C. Patin et al.   Frontiers in Immunology

Differential Location and Distribution of Hepatic Immune Cells

(2017) Maria Freitas-Lopes et al.   Cells

Liver immunology and its role in inflammation and homeostasis

(2016) Mark W Robinson et al.   Cellular & Molecular Immunology

Cross Talk Between Growth and Immunity: Coupling of the IGF Axis to Conserved Cytokine Pathways in Rainbow Trout

(2016) Abdullah Alzaid et al.   ENDOCRINOLOGY

What's new in fish cytokine research?

(2016) Chris J. Secombes   FISH & SHELLFISH IMMUNOLOGY

Labeling and label free shotgun proteomics approaches to characterize muscle tissue from farmed and wild gilthead sea bream (Sparus aurata)

(2016) Susy Piovesana et al.   JOURNAL OF CHROMATOGRAPHY A

Phosphatidylinositol 3-Kinase/Akt Mediates Integrin Signaling To Control RNA Polymerase I Transcriptional Activity

(2016) Chuanyue Wu et al.   MOLECULAR AND CELLULAR BIOLOGY

The Atlantic salmon genome provides insights into rediploidization

(2016) Sigbjørn Lien et al.   NATURE

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

(2016) Stefka Tyanova et al.   Nature Protocols

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Comprehensive and quantitative proteomic analyses of zebrafish plasma reveals conserved protein profiles between genders and between zebrafish and human

(2016) Caixia Li et al.   Scientific Reports

Transcriptomic and proteomic analyses of splenic immune mechanisms of rainbow trout (Oncorhynchus mykiss) infected by Aeromonas salmonicida subsp. salmonicida

(2015) Meng Long et al.   Journal of Proteomics

The role of complement factor C3 in lipid metabolism

(2015) Andreea Barbu et al.   MOLECULAR IMMUNOLOGY

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

(2015) Itamar Sela et al.   NUCLEIC ACIDS RESEARCH

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Complement System Part II: Role in Immunity

(2015) Nicolas S. Merle et al.   Frontiers in Immunology

Thyroid signaling in immune organs and cells of the teleost fish rainbow trout (Oncorhynchus mykiss)

(2014) A. Quesada-García et al.   FISH & SHELLFISH IMMUNOLOGY

Spleen Size Predicts Resistance of Rainbow Trout to Flavobacterium psychrophilum Challenge

(2014) S. Hadidi et al.   JOURNAL OF IMMUNOLOGY

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The Evolution and Appearance of C3 Duplications in Fish Originate an Exclusive Teleost c3 Gene Form with Anti-Inflammatory Activity

(2014) Gabriel Forn-Cuní et al.   PLoS One

Cloning and Characterisation of Multiple Ferritin Isoforms in the Atlantic Salmon (Salmo salar)

(2014) Jun-Hoe Lee et al.   PLoS One

A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification

(2014) D. J. Macqueen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The mucosal immune system of fish: The evolution of tolerating commensals while fighting pathogens

(2013) Daniela Gomez et al.   FISH & SHELLFISH IMMUNOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Teleost skin, an ancient mucosal surface that elicits gut-like immune responses

(2013) Z. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Non-adjuvanted flagellin elicits a non-specific protective immune response in rainbow trout (Oncorhynchus mykiss, Walbaum) towards bacterial infections

(2013) Callum J.W. Scott et al.   VACCINE

Advances in research of fish immune-relevant genes: A comparative overview of innate and adaptive immunity in teleosts

(2012) Lv-yun Zhu et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Immune response from a resource allocation perspective

(2012) Wendy M. Rauw   Frontiers in Genetics

Beyond the endoplasmic reticulum: atypical GRP78 in cell viability, signalling and therapeutic targeting

(2011) Min Ni et al.   BIOCHEMICAL JOURNAL

MissForest--non-parametric missing value imputation for mixed-type data

(2011) D. J. Stekhoven et al.   BIOINFORMATICS

Stress and immune modulation in fish

(2011) Lluis Tort   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Differential Regulation of Endoplasmic Reticulum Stress by Protein Tyrosine Phosphatase 1B and T Cell Protein Tyrosine Phosphatase

(2011) Ahmed Bettaieb et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Starvation alters the liver transcriptome of the innate immune response in Atlantic salmon (Salmo salar)

(2010) Samuel AM Martin et al.   BMC GENOMICS

Two to Tango: Regulation of Mammalian Iron Metabolism

(2010) Matthias W. Hentze et al.   CELL

Hepatic gene expression profiling reveals protective responses in Atlantic salmon vaccinated against furunculosis

(2009) Stanko Škugor et al.   BMC GENOMICS

GOLPH3 Bridges Phosphatidylinositol-4- Phosphate and Actomyosin to Stretch and Shape the Golgi to Promote Budding

(2009) Holly C. Dippold et al.   CELL

Novel mechanism of C-reactive protein for enhancing mouse liver innate immunity

(2009) Akihito Inatsu et al.   HEPATOLOGY

GOLPH3 modulates mTOR signalling and rapamycin sensitivity in cancer

(2009) Kenneth L. Scott et al.   NATURE

The DEAD box RNA helicases p68 (Ddx5) and p72 (Ddx17): novel transcriptional co-regulators

(2008) Frances V. Fuller-Pace et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Serum CRP-like protein profile in common carp Cyprinus carpio challenged with Aeromonas hydrophila and Escherichia coli lipopolysaccharide

(2008) Eugene M. MacCarthy et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Innate immune response in rainbow trout (Oncorhynchus mykiss) against primary and secondary infections with Yersinia ruckeri O1

(2008) Martin Kristian Raida et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Liver-Specific Deletion of Protein-Tyrosine Phosphatase 1B (PTP1B) Improves Metabolic Syndrome and Attenuates Diet-Induced Endoplasmic Reticulum Stress

(2008) M. Delibegovic et al.   DIABETES

Protein-tyrosine Phosphatase 1B Expression Is Induced by Inflammationin Vivo

(2008) Janice M. Zabolotny et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The acute phase protein haptoglobin regulates host immunity

(2008) Kristin M. Huntoon et al.   JOURNAL OF LEUKOCYTE BIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Rainbow trout suppressor of cytokine signalling (SOCS)-1, 2 and 3: Molecular identification, expression and modulation

(2007) Tiehui Wang et al.   MOLECULAR IMMUNOLOGY