UFBoot2: Improving the Ultrafast Bootstrap Approximation

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

(2016) Olga Chernomor et al.   SYSTEMATIC BIOLOGY

Phylogenomic Insights into Animal Evolution

(2015) Maximilian J. Telford et al.   CURRENT BIOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Divergent maximum-likelihood-branch-support values for polytomies

(2014) Mark P. Simmons et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Decisive Data Sets in Phylogenomics: Lessons from Studies on the Phylogenetic Relationships of Primarily Wingless Insects

(2013) Emiliano Dell’Ampio et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring ancient divergences requires genes with strong phylogenetic signals

(2013) Leonidas Salichos et al.   NATURE

Updating the evolutionary history of Carnivora (Mammalia): a new species-level supertree complete with divergence time estimates

(2012) Katrin Nyakatura et al.   BMC BIOLOGY

Macroevolutionary Dynamics and Historical Biogeography of Primate Diversification Inferred from a Species Supermatrix

(2012) Mark S. Springer et al.   PLoS One

Using Supermatrices for Phylogenetic Inquiry: An Example Using the Sedges

(2012) Cody E. Hinchliff et al.   SYSTEMATIC BIOLOGY

Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data

(2010) A. Stamatakis et al.   BIOINFORMATICS

A supermatrix-based molecular phylogeny of the family Drosophilidae

(2010) KIM VAN DER LINDE et al.   Genetics Research

The Prevalence of Multifurcations in Tree-space and Their Implications for Tree-search

(2010) Simon Whelan et al.   MOLECULAR BIOLOGY AND EVOLUTION

MISFITS: Evaluating the Goodness of Fit between a Phylogenetic Model and an Alignment

(2010) Minh Anh Thi Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The phylogeny of advanced snakes (Colubroidea), with discovery of a new subfamily and comparison of support methods for likelihood trees

(2010) R. Alexander Pyron et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Patterns of macroevolution among Primates inferred from a supermatrix of mitochondrial and nuclear DNA

(2009) P-.H. Fabre et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Large multi-gene phylogenetic trees of the grasses (Poaceae): Progress towards complete tribal and generic level sampling

(2008) Yanis Bouchenak-Khelladi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY