Recent progress in the use of ‘omics technologies in brassicaceous vegetables
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Title
Recent progress in the use of ‘omics technologies in brassicaceous vegetables
Authors
Keywords
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Journal
Frontiers in Plant Science
Volume 6, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2015-04-14
DOI
10.3389/fpls.2015.00244
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Note: Only part of the references are listed.- AFLP mapping of quantitative trait loci influencing seven head-related traits in broccoli (Brassica oleraceavar.italica)
- (2016) K. H. Lin et al. JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY
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- (2015) Patricia Lopez-Sanchez et al. FOOD CHEMISTRY
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- (2015) Lorenzo Maggioni et al. HEREDITAS
- Discrimination of conventional and organic white cabbage from a long-term field trial study using untargeted LC-MS-based metabolomics
- (2014) Axel Mie et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Reactivity and Stability of Glucosinolates and Their Breakdown Products in Foods
- (2014) Franziska S. Hanschen et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Transcriptome sequencing of two parental lines of cabbage (Brassica oleracea L. var. capitata L.) and construction of an EST-based genetic map
- (2014) Nur Izzah et al. BMC GENOMICS
- Functional identification of genes responsible for the biosynthesis of 1-methoxy-indol-3-ylmethyl-glucosinolate in Brassica rapa ssp. chinensis
- (2014) Melanie Wiesner et al. BMC PLANT BIOLOGY
- Transcriptomic, Proteomic, Metabolomic and Functional Genomic Approaches for the Study of Abiotic Stress in Vegetable Crops
- (2014) Jing Zhuang et al. CRITICAL REVIEWS IN PLANT SCIENCES
- A metabolomics approach to identify factors influencing glucosinolate thermal degradation rates in Brassica vegetables
- (2014) K. Hennig et al. FOOD CHEMISTRY
- High-throughput sequence analysis of small RNAs in skotomorphogenic seedlings of Brassica rapa ssp. rapa
- (2014) Bo Zhou et al. GENE
- Mapping of quantitative trait loci for the bolting trait in Brassica rapa under vernalizing conditions
- (2014) Y.G. Wang et al. GENETICS AND MOLECULAR RESEARCH
- Metabolite profiling of phenolics, anthocyanins and flavonols in cabbage (Brassica oleracea var. capitata)
- (2014) Suhyoung Park et al. INDUSTRIAL CROPS AND PRODUCTS
- Compositional and Proteomic Analyses of Genetically Modified Broccoli (Brassica oleracea var. italica) Harboring an Agrobacterial Gene
- (2014) Mao-Sen Liu et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Progress in TILLING as a tool for functional genomics and improvement of crops
- (2014) Liang Chen et al. Journal of Integrative Plant Biology
- The Masking Effect of Sucrose on Perception of Bitter Compounds inBrassicaVegetables
- (2014) Tove K. Beck et al. JOURNAL OF SENSORY STUDIES
- Linkage map construction using InDel and SSR markers and QTL analysis of heading traits in Brassica oleracea var. capitata L.
- (2014) Honghao Lv et al. MOLECULAR BREEDING
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- (2014) Xiaoming Song et al. MOLECULAR GENETICS AND GENOMICS
- Simultaneous profiling of seed-associated bacteria and fungi reveals antagonistic interactions between microorganisms within a shared epiphytic microbiome onTriticumandBrassicaseeds
- (2014) Matthew G. Links et al. NEW PHYTOLOGIST
- RNA-Seq Analysis of Transcriptome and Glucosinolate Metabolism in Seeds and Sprouts of Broccoli (Brassica oleracea var. italic)
- (2014) Jinjun Gao et al. PLoS One
- High-Throughput Sequencing and De Novo Assembly of Brassica oleracea var. Capitata L. for Transcriptome Analysis
- (2014) Hyun A. Kim et al. PLoS One
- High-density single nucleotide polymorphism (SNP) array mapping in Brassica oleracea: identification of QTL associated with carotenoid variation in broccoli florets
- (2014) Allan F. Brown et al. THEORETICAL AND APPLIED GENETICS
- Phyllosphere Microbiota Composition and Microbial Community Transplantation on Lettuce Plants Grown Indoors
- (2014) T. R. Williams et al. mBio
- The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
- (2014) Shengyi Liu et al. Nature Communications
- Polymorphism Identification and Improved Genome Annotation of Brassica rapa Through Deep RNA Sequencing
- (2014) Upendra Kumar Devisetty et al. G3-Genes Genomes Genetics
- Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding
- (2014) Rajeev K. Varshney et al. PLOS BIOLOGY
- Root traits and microbial community interactions in relation to phosphorus availability and acquisition, with particular reference to Brassica
- (2014) Paul J. Hunter et al. Frontiers in Plant Science
- Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
- (2014) Isobel AP Parkin et al. GENOME BIOLOGY
- Structure and Functions of the Bacterial Microbiota of Plants
- (2013) Davide Bulgarelli et al. Annual Review of Plant Biology
- A practical data processing workflow for multi-OMICS projects
- (2013) Michael Kohl et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Characterization of the small RNA transcriptome in plant–microbe (Brassica/Erwinia) interactions by high-throughput sequencing
- (2013) Chuan Bao Sun BIOTECHNOLOGY LETTERS
- The broccoli (Brassica oleracea) phloem tissue proteome
- (2013) James A Anstead et al. BMC GENOMICS
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- (2013) Colin R Jackson et al. BMC MICROBIOLOGY
- Genome-Wide Microsatellite Characterization and Marker Development in the Sequenced Brassica Crop Species
- (2013) J. Shi et al. DNA RESEARCH
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- (2013) Yang Liu et al. EUPHYTICA
- Progress in cultivation-independent phyllosphere microbiology
- (2013) Thomas Müller et al. FEMS MICROBIOLOGY ECOLOGY
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- (2013) Gabriela Lopez-Velasco et al. FEMS MICROBIOLOGY LETTERS
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- An improved plant leaf protein extraction method for high resolution two-dimensional polyacrylamide gel electrophoresis and comparative proteomics
- (2012) I Alam et al. BIOTECHNIC & HISTOCHEMISTRY
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- (2012) Wanxing Wang et al. BMC GENOMICS
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- (2012) Stephen Amoah et al. BMC PLANT BIOLOGY
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- (2012) Bumjin Kim et al. BMC PLANT BIOLOGY
- Characterisation of volatile and non-volatile metabolites in etiolated leaves of tea (Camellia sinensis) plants in the dark
- (2012) Ziyin Yang et al. FOOD CHEMISTRY
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- (2012) Jahan Kim et al. FOOD CHEMISTRY
- Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce
- (2012) Gurdeep Rastogi et al. ISME Journal
- Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing Technology
- (2012) Samanta B. de Campos et al. MICROBIAL ECOLOGY
- Microbial life in the phyllosphere
- (2012) Julia A. Vorholt NATURE REVIEWS MICROBIOLOGY
- UV-B Irradiation Changes Specifically the Secondary Metabolite Profile in Broccoli Sprouts: Induced Signaling Overlaps with Defense Response to Biotic Stressors
- (2012) Inga Mewis et al. PLANT AND CELL PHYSIOLOGY
- Genetic mapping and localization of quantitative trait loci for chlorophyll content in Chinese cabbage (Brassica rapa ssp. pekinensis)
- (2012) Yu Ge et al. SCIENTIA HORTICULTURAE
- Metabolite profiling of Komatsuna (Brassica rapaL.) field-grown under different soil organic amendment and fertilization regimes
- (2012) Keiki Okazaki et al. SOIL SCIENCE AND PLANT NUTRITION
- Genetic analysis of morphological traits in a new, versatile, rapid-cycling Brassica rapa recombinant inbred line population
- (2012) Hedayat Bagheri et al. Frontiers in Plant Science
- Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology
- (2011) Jürgen Cox et al. Annual Review of Biochemistry
- Transcriptomic, proteomic and metabolomic analysis of UV-B signaling in maize
- (2011) Paula Casati et al. BMC GENOMICS
- Water stress alters aphid-induced glucosinolate response in Brassica oleracea var. italica differently
- (2011) M. A. M. Khan et al. CHEMOECOLOGY
- Genetic diversity of Brassica oleracea var. capitata gene bank accessions assessed by AFLP
- (2011) Zuzana Faltusová et al. ELECTRONIC JOURNAL OF BIOTECHNOLOGY
- Wheat Hybridization and Polyploidization Results in Deregulation of Small RNAs
- (2011) Michal Kenan-Eichler et al. GENETICS
- Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice
- (2011) Claudia Knief et al. ISME Journal
- Enhanced Glucosinolates in Root Exudates of Brassica rapa ssp.rapaMediated by Salicylic Acid and Methyl Jasmonate
- (2011) Monika Schreiner et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- TILLING - a shortcut in functional genomics
- (2011) Marzena Kurowska et al. JOURNAL OF APPLIED GENETICS
- Quantitative proteomics by 2DE and MALDI MS/MS uncover the effects of organic and conventional cropping methods on vegetable products
- (2011) Arkadiusz Nawrocki et al. Journal of Proteomics
- The potential role of nutritional genomics tools in validating high health foods for cancer control: Broccoli as example
- (2011) Lynnette R. Ferguson et al. MOLECULAR NUTRITION & FOOD RESEARCH
- The genome of the mesopolyploid crop species Brassica rapa
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- Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions
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- (2011) N. FERNANDEZ-GARCIA et al. PLANT CELL AND ENVIRONMENT
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- (2011) Guiling Sun PLANT MOLECULAR BIOLOGY
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- (2011) Laetitia Ligat et al. PROTEOMICS
- A new broccoli × broccoli immortal mapping population and framework genetic map: tools for breeders and complex trait analysis
- (2011) Peter Glen Walley et al. THEORETICAL AND APPLIED GENETICS
- Genetic architecture of the circadian clock and flowering time in Brassica rapa
- (2011) P. Lou et al. THEORETICAL AND APPLIED GENETICS
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- Both Leaf Properties and Microbe-Microbe Interactions Influence Within-Species Variation in Bacterial Population Diversity and Structure in the Lettuce (Lactuca Species) Phyllosphere
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- (2010) Ibrahim B. Abdel-Farid et al. BIOCHEMICAL SYSTEMATICS AND ECOLOGY
- A rich TILLING resource for studying gene function in Brassica rapa
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- Detection of quantitative trait loci controlling morphological traits in Brassica rapa L.
- (2010) Nakao Kubo et al. BREEDING SCIENCE
- Identification and quantitative determination of glucosinolates in seeds and edible parts of Korean Chinese cabbage
- (2010) Eunyoung Hong et al. FOOD CHEMISTRY
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- (2010) Gang Lu et al. JOURNAL OF APPLIED GENETICS
- Characterization of seedling proteomes and development of markers to distinguish the Brassica A and C genomes
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- Two-dimensional gel electrophoresis in proteomics: Past, present and future
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- (2010) Julien Boccard et al. JOURNAL OF SEPARATION SCIENCE
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- (2010) Katja Witzel et al. MOLECULAR BREEDING
- Visualization of omics data for systems biology
- (2010) Nils Gehlenborg et al. NATURE METHODS
- Recent progress in liquid chromatography-based separation and label-free quantitative plant proteomics
- (2010) A. Matros et al. PHYTOCHEMISTRY
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- (2010) Eugenia M.A. Enfissi et al. PLANT CELL
- The patterns of population differentiation in a Brassica rapa core collection
- (2010) Dunia Pino Del Carpio et al. THEORETICAL AND APPLIED GENETICS
- Biosynthesis of glucosinolates – gene discovery and beyond
- (2010) Ida E. Sønderby et al. TRENDS IN PLANT SCIENCE
- Genetic analysis of potassium use efficiency in Brassica oleracea
- (2009) P. J. White et al. ANNALS OF BOTANY
- A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences
- (2009) Martin Trick et al. BMC PLANT BIOLOGY
- Ontogenetic Changes of 2-Propenyl and 3-Indolylmethyl Glucosinolates inBrassica carinataLeaves as Affected by Water Supply
- (2009) Monika Schreiner et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Bio-protective effects of glucosinolates – A review
- (2009) Adarsh Pal Vig et al. LWT-FOOD SCIENCE AND TECHNOLOGY
- Fungal infection-induced metabolites in Brassica rapa
- (2009) I.B. Abdel-Farid et al. PLANT SCIENCE
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- (2009) Xiang Li et al. PLANT SCIENCE
- Metabolomic analysis in food science: a review
- (2009) Juan M. Cevallos-Cevallos et al. TRENDS IN FOOD SCIENCE & TECHNOLOGY
- Double haploids, markers and QTL analysis in vegetable brassicas
- (2008) David Pink et al. EUPHYTICA
- RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
- (2008) J. C. Marioni et al. GENOME RESEARCH
- Discriminating between Cultivars and Treatments of Broccoli Using Mass Spectral Fingerprinting and Analysis of Variance−Principal Component Analysis
- (2008) Devanand L. Luthria et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- RNA silencing is required for Arabidopsis defence against Verticillium wilt disease
- (2008) Ursula Ellendorff et al. JOURNAL OF EXPERIMENTAL BOTANY
- Growth inhibition in Chinese cabbage (Brassica rapa var. chinensis) growth exposed to di-n-butyl phthalate
- (2008) Chien-Sen Liao et al. JOURNAL OF HAZARDOUS MATERIALS
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- (2008) Muhammad Jahangir et al. JOURNAL OF PLANT PHYSIOLOGY
- Composition of the Phyllospheric Microbial Populations on Vegetable Plants with Different Glucosinolate and Carotenoid Compositions
- (2008) Silke Ruppel et al. MICROBIAL ECOLOGY
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- (2008) Ruud Verkerk et al. MOLECULAR NUTRITION & FOOD RESEARCH
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