Elucidation of salt stress defense and tolerance mechanisms of crop plants using proteomics-Current achievements and perspectives

Endophytic fungal association via gibberellins and indole acetic acid can improve plant growth under abiotic stress: an example of Paecilomyces formosus LHL10

(2012) Abdul Khan et al.   BMC MICROBIOLOGY

Microbial amelioration of crop salinity stress

(2012) I. C. Dodd et al.   JOURNAL OF EXPERIMENTAL BOTANY

Methyl Jasmonate Responsive Proteins in Brassica napus Guard Cells Revealed by iTRAQ-Based Quantitative Proteomics

(2012) Mengmeng Zhu et al.   JOURNAL OF PROTEOME RESEARCH

Changes in physiology and protein abundance in salt-stressed wheat chloroplasts

(2012) Abu Hena Mostafa Kamal et al.   MOLECULAR BIOLOGY REPORTS

The proteome response of salt-resistant and salt-sensitive barley genotypes to long-term salinity stress

(2012) Foad Fatehi et al.   MOLECULAR BIOLOGY REPORTS

Ultrastructural evidence for AMF mediated salt stress mitigation in Trigonella foenum-graecum

(2012) Heikham Evelin et al.   MYCORRHIZA

Brassinosteroid regulates stomatal development by GSK3-mediated inhibition of a MAPK pathway

(2012) Tae-Wuk Kim et al.   NATURE

Patchwork organization of the yeast plasma membrane into numerous coexisting domains

(2012) Felix Spira et al.   NATURE CELL BIOLOGY

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

(2012) Christian Riedelsheimer et al.   NATURE GENETICS

Clarifying Omics Concepts, Challenges, and Opportunities for Prunus Breeding in the Postgenomic Era

(2012) Pedro Martínez-Gómez et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Effects of exogenous auxin and ethylene on the Arabidopsis root proteome

(2012) William O. Slade et al.   PHYTOCHEMISTRY

Tackling Drought Stress: RECEPTOR-LIKE KINASES Present New Approaches

(2012) Alex Marshall et al.   PLANT CELL

Arabidopsis Ubiquitin Conjugase UBC32 Is an ERAD Component That Functions in Brassinosteroid-Mediated Salt Stress Tolerance

(2012) F. Cui et al.   PLANT CELL

Cell type-specific transcriptional profiling: implications for metabolite profiling

(2012) Eric D. Rogers et al.   PLANT JOURNAL

High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions

(2012) Stephan Kueger et al.   PLANT JOURNAL

PhosphoRice: a meta-predictor of rice-specific phosphorylation sites

(2012) Shufu Que et al.   Plant Methods

Proteome Analysis in Arabidopsis Reveals Shoot- and Root-Specific Targets of Cytokinin Action and Differential Regulation of Hormonal Homeostasis

(2012) M. Zd'arska et al.   PLANT PHYSIOLOGY

Proteomic analysis of rice anthers under salt stress

(2012) Elham Sarhadi et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Proteomic identification of MYC2-dependent jasmonate-regulated proteins in Arabidopsis thaliana

(2012) Jing Guo et al.   Proteome Science

The current state of microbial proteomics: Where we are and where we want to go

(2012) Tzu-Chiao Chao et al.   PROTEOMICS

Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate

(2012) H. Alexander Ebhardt et al.   PROTEOMICS

Protein profiling of epidermal bladder cells from the halophyteMesembryanthemum crystallinum

(2012) Bronwyn J. Barkla et al.   PROTEOMICS

Proteomic analysis of salt-responsive ubiquitin-related proteins in rice roots

(2012) Chih-Wei Liu et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Salinity stress alleviation using arbuscular mycorrhizal fungi. A review

(2011) Rosa Porcel et al.   Agronomy for Sustainable Development

Proteomics analysis of salt-induced leaf proteins in two rice germplasms with different salt sensitivity

(2011) Dong-Gi Lee et al.   CANADIAN JOURNAL OF PLANT SCIENCE

Novel biological insights revealed from cell type-specific expression profiling

(2011) Mallorie Taylor-Teeples et al.   CURRENT OPINION IN PLANT BIOLOGY

Many needles in a haystack: cell-type specific abiotic stress responses

(2011) Terri A Long   CURRENT OPINION IN PLANT BIOLOGY

Quantitative plant phosphoproteomics

(2011) Kelli G Kline-Jonakin et al.   CURRENT OPINION IN PLANT BIOLOGY

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Proteomic Analysis of Salt Stress Responses in Rice Shoot

(2011) Xiao-Juan Li et al.   JOURNAL OF PLANT BIOLOGY

Differential Transcript Expression of Wall-loosening Candidates in Leaves of Maize Cultivars Differing in Salt Resistance

(2011) Christoph-Martin Geilfus et al.   JOURNAL OF PLANT GROWTH REGULATION

Proteomic identification of differentially expressed proteins in Arabidopsis in response to methyl jasmonate

(2011) Yazhou Chen et al.   JOURNAL OF PLANT PHYSIOLOGY

ABA-mediated transcriptional regulation in response to osmotic stress in plants

(2011) Yasunari Fujita et al.   JOURNAL OF PLANT RESEARCH

Plant Cell Organelle Proteomics in Response to Abiotic Stress

(2011) Zahed Hossain et al.   JOURNAL OF PROTEOME RESEARCH

Mechanisms of Plant Salt Response: Insights from Proteomics

(2011) Heng Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Identification of NaCl stress-responsive apoplastic proteins in rice shoot stems by 2D-DIGE

(2011) Yun Song et al.   Journal of Proteomics

Challenges and solutions for the identification of membrane proteins in non-model plants

(2011) A. Vertommen et al.   Journal of Proteomics

Quantitative trait loci for salinity tolerance in barley (Hordeum vulgare L.)

(2011) Gaofeng Zhou et al.   MOLECULAR BREEDING

Spatially resolved analysis of small molecules by matrix-assisted laser desorption/ionization mass spectrometric imaging (MALDI-MSI)

(2011) Manuela Peukert et al.   NEW PHYTOLOGIST

Omics of Root-to-Shoot Signaling Under Salt Stress and Water Deficit

(2011) Francisco Pérez-Alfocea et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Salt-Stress Induced Physiological and Proteomic Changes in Tomato (Solanum lycopersicum) Seedlings

(2011) Arafet Manaa et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Exophiala sp. LHL08 reprograms Cucumis sativus to higher growth under abiotic stresses

(2011) Abdul L. Khan et al.   PHYSIOLOGIA PLANTARUM

Post-translation modification of proteins; methodologies and applications in plant sciences

(2011) A.E. Bond et al.   PHYTOCHEMISTRY

Advances in qualitative and quantitative plant membrane proteomics

(2011) Uma Kota et al.   PHYTOCHEMISTRY

Mechanisms of Water Transport Mediated by PIP Aquaporins and Their Regulation Via Phosphorylation Events Under Salinity Stress in Barley Roots

(2011) Tomoaki Horie et al.   PLANT AND CELL PHYSIOLOGY

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

(2011) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Impact of PGPR inoculation on growth and antioxidant status of wheat under saline conditions

(2011) Sudhir Kumar Upadhyay et al.   PLANT BIOLOGY

Plant tolerance to drought and salinity: stress regulating transcription factors and their functional significance in the cellular transcriptional network

(2011) Dortje Golldack et al.   PLANT CELL REPORTS

Rice ABI5-Like1 Regulates Abscisic Acid and Auxin Responses by Affecting the Expression of ABRE-Containing Genes

(2011) X. Yang et al.   PLANT PHYSIOLOGY

Enhancing Arabidopsis Leaf Growth by Engineering the BRASSINOSTEROID INSENSITIVE1 Receptor Kinase

(2011) Man-Ho Oh et al.   PLANT PHYSIOLOGY

Comparative phosphoproteomic analysis of microsomal fractions of Arabidopsis thaliana and Oryza sativa subjected to high salinity

(2011) Ing-Feng Chang et al.   PLANT SCIENCE

Coordination of carbon fixation and nitrogen metabolism in Salicornia europaea under salinity: Comparative proteomic analysis on chloroplast proteins

(2011) Pengxiang Fan et al.   PROTEOMICS

The role of mitochondrial respiration in salinity tolerance

(2011) Richard P. Jacoby et al.   TRENDS IN PLANT SCIENCE

Pure culture of Metarhizium anisopliae LHL07 reprograms soybean to higher growth and mitigates salt stress

(2011) Abdul Latif Khan et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Protein analysis of laser capture micro-dissected tissues revealed cell-type specific biological functions in developing barley grains

(2010) Stephanie Kaspar et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

The Physiological, Biochemical and Molecular Roles of Brassinosteroids and Salicylic Acid in Plant Processes and Salt Tolerance

(2010) M. Ashraf et al.   CRITICAL REVIEWS IN PLANT SCIENCES

HvNax3—a locus controlling shoot sodium exclusion derived from wild barley (Hordeum vulgare ssp. spontaneum)

(2010) Yuri Shavrukov et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Hormonal regulation of source–sink relations to maintain crop productivity under salinity: a case study of root-to-shoot signalling in tomato

(2010) Francisco Pérez-Alfocea et al.   FUNCTIONAL PLANT BIOLOGY

ABA receptors: the START of a new paradigm in phytohormone signalling

(2010) J. P. Klingler et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root-synthesized cytokinins improve shoot growth and fruit yield in salinized tomato (Solanum lycopersicum L.) plants

(2010) Michel Edmond Ghanem et al.   JOURNAL OF EXPERIMENTAL BOTANY

Wheat Mitochondrial Proteomes Provide New Links between Antioxidant Defense and Plant Salinity Tolerance

(2010) Richard P. Jacoby et al.   JOURNAL OF PROTEOME RESEARCH

Comparative Proteomics of Salt Tolerance inArabidopsis thalianaandThellungiella halophila

(2010) Qiuying Pang et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic response of barley leaves to salinity

(2010) Abdolrahman Rasoulnia et al.   MOLECULAR BIOLOGY REPORTS

Phospho.ELM: a database of phosphorylation sites--update 2011

(2010) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

PHOSIDA 2011: the posttranslational modification database

(2010) F. Gnad et al.   NUCLEIC ACIDS RESEARCH

Recent progress in liquid chromatography-based separation and label-free quantitative plant proteomics

(2010) A. Matros et al.   PHYTOCHEMISTRY

Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach

(2010) Matthias Steinfath et al.   PLANT BIOTECHNOLOGY JOURNAL

The transcription factor SlAREB1 confers drought, salt stress tolerance and regulates biotic and abiotic stress-related genes in tomato

(2010) SANDRA ORELLANA et al.   PLANT CELL AND ENVIRONMENT

Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants

(2010) Shou-Qiang Ouyang et al.   PLANT JOURNAL

Nonhost Resistance of Barley to Different Fungal Pathogens Is Associated with Largely Distinct, Quantitative Transcriptional Responses

(2010) N. Zellerhoff et al.   PLANT PHYSIOLOGY

Nucleocytoplasmic Distribution of the Arabidopsis Chromatin-Associated HMGB2/3 and HMGB4 Proteins

(2010) D. S. Pedersen et al.   PLANT PHYSIOLOGY

Salt stress differentially affects growth-mediating β-expansins in resistant and sensitive maize (Zea mays L.)

(2010) Christoph-Martin Geilfus et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

In planta changes in protein phosphorylation induced by the plant hormone abscisic acid

(2010) K. G. Kline et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signaling from the Endoplasmic Reticulum Activates Brassinosteroid Signaling and Promotes Acclimation to Stress in Arabidopsis

(2010) P. Che et al.   Science Signaling

Arbuscular mycorrhizal fungi in alleviation of salt stress: a review

(2009) Heikham Evelin et al.   ANNALS OF BOTANY

Proteomic Analysis of Specific Proteins in the Root of Salt-Tolerant Barley

(2009) Manabu SUGIMOTO et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics

(2009) Paola Picotti et al.   CELL

Metabolic responses to salt stress of barley (Hordeum vulgare L.) cultivars, Sahara and Clipper, which differ in salinity tolerance

(2009) Widodo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Salt stress-induced alterations in the root proteome of barley genotypes with contrasting response towards salinity

(2009) Katja Witzel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Insights into the salt tolerance mechanism in barley (Hordeum vulgare) from comparisons of cultivars that differ in salt sensitivity

(2009) Ayalew Ligaba et al.   JOURNAL OF PLANT RESEARCH

A Proteomic Study of the Response to Salinity and Drought Stress in an Introgression Strain of Bread Wheat

(2009) Zhenying Peng et al.   MOLECULAR & CELLULAR PROTEOMICS

Functional analysis of natural microbial consortia using community proteomics

(2009) Nathan C. VerBerkmoes et al.   NATURE REVIEWS MICROBIOLOGY

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

(2009) Pawel Durek et al.   NUCLEIC ACIDS RESEARCH

Shoot Na+ Exclusion and Increased Salinity Tolerance Engineered by Cell Type-Specific Alteration of Na+ Transport in Arabidopsis

(2009) I. S. Moller et al.   PLANT CELL

Quantitative Proteomics of the Tonoplast Reveals a Role for Glycolytic Enzymes in Salt Tolerance

(2009) B. J. Barkla et al.   PLANT CELL

Rootstock-mediated changes in xylem ionic and hormonal status are correlated with delayed leaf senescence, and increased leaf area and crop productivity in salinized tomato

(2009) ALFONSO ALBACETE et al.   PLANT CELL AND ENVIRONMENT

Analysis of the salt-stress response at cell-type resolution

(2009) JOSÉ R. DINNENY   PLANT CELL AND ENVIRONMENT

Mitochondrial proteome during salt stress-induced programmed cell death in rice

(2009) Xi Chen et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Proteomics reveals the effects of gibberellic acid (GA3) on salt-stressed rice (Oryza sativa L.) shoots

(2009) Fu-ping Wen et al.   PLANT SCIENCE

Functional phosphoproteomic profiling of phosphorylation sites in membrane fractions of salt-stressed Arabidopsis thaliana

(2009) Jue-Liang Hsu et al.   Proteome Science

Short-term effects of salt exposure on the maize chloroplast protein pattern

(2009) Christian Zörb et al.   PROTEOMICS

New changes in the plasma-membrane-associated proteome of rice roots under salt stress

(2009) Yanwei Cheng et al.   PROTEOMICS

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

(2009) Stéphane Compant et al.   SOIL BIOLOGY & BIOCHEMISTRY

Conceptual framework for drought phenotyping during molecular breeding

(2009) Ghasem Hosseini Salekdeh et al.   TRENDS IN PLANT SCIENCE

Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell

(2008) M. M. Chaves et al.   ANNALS OF BOTANY

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Stress adaptations in a Plant Growth Promoting Rhizobacterium (PGPR) with increasing salinity in the coastal agricultural soils

(2008) Diby Paul et al.   JOURNAL OF BASIC MICROBIOLOGY

Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM)

(2008) John C. Cushman et al.   JOURNAL OF EXPERIMENTAL BOTANY

Hormonal changes in relation to biomass partitioning and shoot growth impairment in salinized tomato (Solanum lycopersicum L.) plants

(2008) A. Albacete et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative mapping of HKT genes in wheat, barley, and rice, key determinants of Na+ transport, and salt tolerance

(2008) S. Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Abiotic environmental stress induced changes in the Arabidopsis thaliana chloroplast, mitochondria and peroxisome proteomes

(2008) Nicolas L. Taylor et al.   Journal of Proteomics

Different Hormonal Regulation of Cellular Differentiation and Function in Nucellar Projection and Endosperm Transfer Cells: A Microdissection-Based Transcriptome Study of Young Barley Grains

(2008) J. Thiel et al.   PLANT PHYSIOLOGY

Identification of an Apoplastic Protein Involved in the Initial Phase of Salt Stress Response in Rice Root by Two-Dimensional Electrophoresis

(2008) L. Zhang et al.   PLANT PHYSIOLOGY

Proteomic analysis on a high salt tolerance introgression strain ofTriticum aestivum/Thinopyrum ponticum

(2008) Meng-Cheng Wang et al.   PROTEOMICS

ECOLOGY: Crops for a Salinized World

(2008) J. Rozema et al.   SCIENCE

Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress

(2008) J. R. Dinneny et al.   SCIENCE

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY