RNA-Seq Analysis of Transcriptome and Glucosinolate Metabolism in Seeds and Sprouts of Broccoli (Brassica oleracea var. italic)

Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq

(2013) Md Shamimuzzaman et al.   BMC GENOMICS

RNA-Seq Analysis of Cocos nucifera: Transcriptome Sequencing and De Novo Assembly for Subsequent Functional Genomics Approaches

(2013) Haikuo Fan et al.   PLoS One

Cys2His2 zinc finger protein family: Classification, functions, and major members

(2012) S. V. Razin et al.   BIOCHEMISTRY-MOSCOW

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)

(2012) Dejun Li et al.   BMC GENOMICS

De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)

(2012) Xue-Mei Zhang et al.   PLoS One

B2G-FAR, a species-centered GO annotation repository

(2011) Stefan Götz et al.   BIOINFORMATICS

RNA-Seq analysis in MeV

(2011) E. A. Howe et al.   BIOINFORMATICS

Synthetic spike-in standards for RNA-seq experiments

(2011) L. Jiang et al.   GENOME RESEARCH

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

(2011) S. Powell et al.   NUCLEIC ACIDS RESEARCH

Metabolic Engineering inNicotiana benthamianaReveals Key Enzyme Functions inArabidopsisIndole Glucosinolate Modification

(2011) Marina Pfalz et al.   PLANT CELL

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

HAG2/MYB76 and HAG3/MYB29 exert a specific and coordinated control on the regulation of aliphatic glucosinolate biosynthesis inArabidopsis thaliana

(2009) Tamara Gigolashvili et al.   NEW PHYTOLOGIST

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Comparative Profiles of Gene Expression in Leaves and Roots of Maize Seedlings under Conditions of Salt Stress and the Removal of Salt Stress

(2009) Dong-Jin Qing et al.   PLANT AND CELL PHYSIOLOGY

The bHLH Transcription Factor SPATULA Controls Final Leaf Size in Arabidopsis thaliana

(2009) Yasunori Ichihashi et al.   PLANT AND CELL PHYSIOLOGY

Myrosinases, TGG1 and TGG2, Redundantly Function in ABA and MeJA Signaling in Arabidopsis Guard Cells

(2009) M. M. Islam et al.   PLANT AND CELL PHYSIOLOGY

FAR-RED ELONGATED HYPOCOTYL1 and FHY1-LIKE Associate with the Arabidopsis Transcription Factors LAF1 and HFR1 to Transmit Phytochrome A Signals for Inhibition of Hypocotyl Elongation

(2009) S. W. Yang et al.   PLANT CELL

MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis

(2009) J. Zhou et al.   PLANT CELL

Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches

(2008) Foo Cheung et al.   BMC GENOMICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Functional Proteomics of Arabidopsis thaliana Guard Cells Uncovers New Stomatal Signaling Pathways

(2008) Z. Zhao et al.   PLANT CELL

A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis

(2008) R. Zhong et al.   PLANT CELL

The glutathione-deficient mutantpad2-1accumulates lower amounts of glucosinolates and is more susceptible to the insect herbivoreSpodoptera littoralis

(2008) Klaus Schlaeppi et al.   PLANT JOURNAL

CRY1 inhibits COP1-mediated degradation of BIT1, a MYB transcription factor, to activate blue light-dependent gene expression in Arabidopsis

(2008) Sung Hyun Hong et al.   PLANT JOURNAL

Subclade of Flavin-Monooxygenases Involved in Aliphatic Glucosinolate Biosynthesis

(2008) J. Li et al.   PLANT PHYSIOLOGY

Glucosinolate Metabolites Required for an Arabidopsis Innate Immune Response

(2008) N. K. Clay et al.   SCIENCE

A Glucosinolate Metabolism Pathway in Living Plant Cells Mediates Broad-Spectrum Antifungal Defense

(2008) P. Bednarek et al.   SCIENCE

Arabidopsis Branched-Chain Aminotransferase 3 Functions in Both Amino Acid and Glucosinolate Biosynthesis

(2007) T. Knill et al.   PLANT PHYSIOLOGY