Simultaneous profiling of seed-associated bacteria and fungi reveals antagonistic interactions between microorganisms within a shared epiphytic microbiome onTriticumandBrassicaseeds

mPUMA: a computational approach to microbiota analysis by de novo assembly of operational taxonomic units based on protein-coding barcode sequences

(2013) Matthew G Links et al.   Microbiome

Continuous Winter Wheat Versus a Winter Canola–Winter Wheat Rotation

(2012) Joshua A. Bushong et al.   AGRONOMY JOURNAL

High-yield no-till canola production on the Canadian prairies

(2012) K. N. Harker et al.   CANADIAN JOURNAL OF PLANT SCIENCE

Factors influencing the microbial safety of fresh produce: A review

(2012) Amin N. Olaimat et al.   FOOD MICROBIOLOGY

Toxigenic Alternaria species from Argentinean blueberries

(2012) M. Greco et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

(2012) Gurdeep Rastogi et al.   ISME Journal

Improved Microbial Quality of Buckwheat using Antimicrobial Solutions in a Fluidized Bed

(2012) B. Dhillon et al.   JOURNAL OF FOOD SCIENCE

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The Chaperonin-60 Universal Target Is a Barcode for Bacteria That Enables De Novo Assembly of Metagenomic Sequence Data

(2012) Matthew G. Links et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiology is the basis of sustainable agriculture: an opinion

(2011) I.A. Tikhonovich et al.   ANNALS OF APPLIED BIOLOGY

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

(2011) Thomas M. Gihring et al.   ENVIRONMENTAL MICROBIOLOGY

A Molecular Enrichment Strategy Based on cpn60 for Detection of Epsilon-Proteobacteria in the Dog Fecal Microbiome

(2011) Bonnie Chaban et al.   MICROBIAL ECOLOGY

Endophyte Microbiome Diversity in Micropropagated Atriplex canescens and Atriplex torreyi var griffithsii

(2011) Mary E. Lucero et al.   PLoS One

Conservation and Diversity of Seed Associated Endophytes in Zea across Boundaries of Evolution, Ethnography and Ecology

(2011) David Johnston-Monje et al.   PLoS One

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Predicting relatedness of bacterial genomes using the chaperonin-60 universal target (cpn60 UT): Application to Thermoanaerobacter species

(2011) Tobin J. Verbeke et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Soil beneficial bacteria and their role in plant growth promotion: a review

(2010) Rifat Hayat et al.   ANNALS OF MICROBIOLOGY

Energy crops in rotation. A review

(2010) Walter Zegada-Lizarazu et al.   BIOMASS & BIOENERGY

Microbial ecology of foodborne pathogens associated with produce

(2010) Faith J Critzer et al.   CURRENT OPINION IN BIOTECHNOLOGY

Pyrosequencing of the Chaperonin-60 Universal Target as a Tool for Determining Microbial Community Composition

(2009) J. Schellenberg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A review on ochratoxin A occurrence and effects of processing of cereal and cereal derived food products

(2009) S.C. Duarte et al.   FOOD MICROBIOLOGY

Multiplex Detection of Bacteria Associated with Normal Microbiota and with Bacterial Vaginosis in Vaginal Swabs by Use of Oligonucleotide-Coupled Fluorescent Microspheres

(2009) T. J. Dumonceaux et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Resolution of Phenotypically Distinct Strains of Enterococcus spp. in a Complex Microbial Community Using cpn60 Universal Target Sequencing

(2009) Catherine J. Vermette et al.   MICROBIAL ECOLOGY

Efficient algorithms for the discovery of DNA oligonucleotide barcodes from sequence databases

(2009) M. ZAHARIEV et al.   Molecular Ecology Resources

A statistical toolbox for metagenomics: assessing functional diversity in microbial communities

(2008) Patrick D Schloss et al.   BMC BIOINFORMATICS