Molecular Methods in Food Safety Microbiology: Interpretation and Implications of Nucleic Acid Detection

Propidium monoazide–quantitative polymerase chain reaction for viable Escherichia coli and Pseudomonas aeruginosa detection from abundant background microflora

(2013) Eva Theres Gensberger et al.   ANALYTICAL BIOCHEMISTRY

High-Throughput Sequencing and Metagenomics: Moving Forward in the Culture-Independent Analysis of Food Microbial Ecology

(2013) Danilo Ercolini   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Use of propidium monoazide and increased amplicon length reduce false-positive signals in quantitative PCR for bioburden analysis

(2013) Franz Schnetzinger et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Determination of viable Salmonellae from potable and source water through PMA assisted qPCR

(2013) Gulshan Singh et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Combining ethidium monoazide treatment with real-time PCR selectively quantifies viable Batrachochytrium dendrobatidis cells

(2013) Mark Blooi et al.   Fungal Biology

Potential impact of environmental bacteriophages in spreading antibiotic resistance genes

(2013) Maite Muniesa et al.   Future Microbiology

Propidium monoazide combined with real-time quantitative PCR to quantify viable Alternaria spp. contamination in tomato products

(2013) Ana Crespo-Sempere et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Food Microbe Tracker: A Web-Based Tool for Storage and Comparison of Food-Associated Microbes

(2013) PAJAU VANGAY et al.   JOURNAL OF FOOD PROTECTION

Effect of Different Heat Treatments on the Degradation ofSalmonellaNucleic Acid

(2013) Miaoyun Li et al.   JOURNAL OF FOOD SAFETY

Presence of enteroviruses in recreational water in Wuhan, China

(2013) Erin Allmann et al.   JOURNAL OF VIROLOGICAL METHODS

Exploring the Sources of Bacterial Spoilers in Beefsteaks by Culture-Independent High-Throughput Sequencing

(2013) Francesca De Filippis et al.   PLoS One

Complete Genes May Pass from Food to Human Blood

(2013) Sándor Spisák et al.   PLoS One

Viral genes everywhere: public health implications of PCR-based testing of foods

(2013) Ambroos Stals et al.   Current Opinion in Virology

Antimicrobial Resistance in the Food Chain: A Review

(2013) Claire Verraes et al.   International Journal of Environmental Research and Public Health

Next-generation sequencing and its potential impact on food microbial genomics

(2012) Lisa Solieri et al.   ANNALS OF MICROBIOLOGY

Internalization and Dissemination of Human Norovirus and Animal Caliciviruses in Hydroponically Grown Romaine Lettuce

(2012) Erin DiCaprio et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Scout Hypothesis and Microbial Discovery

(2012) S. Buerger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

“Remake” by High-Throughput Sequencing of the Microbiota Involved in the Production of Water Buffalo Mozzarella Cheese

(2012) Danilo Ercolini et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High-Throughput Sequencing for Detection of Subpopulations of Bacteria Not Previously Associated with Artisanal Cheeses

(2012) Lisa Quigley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantification of viable spray-dried potential probiotic lactobacilli using real-time PCR

(2012) Zorica Radulovic et al.   Archives of Biological Sciences

Next-generation approaches to the microbial ecology of food fermentations

(2012) Nicholas A. Bokulich et al.   BMB Reports

A critical review of methods for detecting human noroviruses and predicting their infectivity

(2012) Angus Knight et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Viruses in Nondisinfected Drinking Water from Municipal Wells and Community Incidence of Acute Gastrointestinal Illness

(2012) Mark A. Borchardt et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Resistance to environmental stresses byVibrio vulnificusin the viable but nonculturable state

(2012) Joanna Nowakowska et al.   FEMS MICROBIOLOGY ECOLOGY

Establishment of a viable cell detection system for microorganisms in wine based on ethidium monoazide and quantitative PCR

(2012) Hui Shi et al.   FOOD CONTROL

Inactivation of foodborne pathogens in raw milk using high hydrostatic pressure

(2012) Baowei Yang et al.   FOOD CONTROL

Detection of viable but non-culturable Escherichia coli O157:H7 from vegetable samples using quantitative PCR with propidium monoazide and immunological assays

(2012) Laura-Dorina Dinu et al.   FOOD CONTROL

Comparison of heat stress responses of immobilized and planktonic Salmonella enterica serovar Typhimurium

(2012) Maj-Britt Nielsen et al.   FOOD MICROBIOLOGY

Thermal stability of structurally different viruses with proven or potential relevance to food safety

(2012) E. Tuladhar et al.   JOURNAL OF APPLIED MICROBIOLOGY

The impact of temperature on the inactivation of enteric viruses in food and water: a review

(2012) I. Bertrand et al.   JOURNAL OF APPLIED MICROBIOLOGY

Critical Issues in Detecting Viable Listeria monocytogenes Cells by Real-Time Reverse Transcriptase PCR

(2012) LINLIN XIAO et al.   JOURNAL OF FOOD PROTECTION

Quantitative study of viable Vibrio parahaemolyticus cells in raw seafood using propidium monoazide in combination with quantitative PCR

(2012) Ru-Gang Zhu et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Method Enabling Gene Expression Studies of Pathogens in a Complex Food Matrix

(2011) Jette Kjeldgaard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Selective Quantification of Viable Escherichia coli Bacteria in Biosolids by Quantitative PCR with Propidium Monoazide Modification

(2011) Bilgin Taskin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Serological Responses to Experimental Norwalk Virus Infection Measured Using a Quantitative Duplex Time-Resolved Fluorescence Immunoassay

(2011) Owen Kavanagh et al.   Clinical and Vaccine Immunology

The Stability and Degradation of Dietary DNA in the Gastrointestinal Tract of Mammals: Implications for Horizontal Gene Transfer and the Biosafety of GMOs

(2011) Aurora Rizzi et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Regulation of toxin production by Bacillus cereus and its food safety implications

(2011) Siele Ceuppens et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Human distal gut microbiome

(2011) Julian R. Marchesi   ENVIRONMENTAL MICROBIOLOGY

EHEC/EAEC O104:H4 strain linked with the 2011 German outbreak of haemolytic uremic syndrome enters into the viable but non-culturable state in response to various stresses and resuscitates upon stress relief

(2011) Philipp Aurass et al.   ENVIRONMENTAL MICROBIOLOGY

A New Validated Real-Time PCR-Based Method for the Specific and Fast Detection of Cronobacter spp. in Infant Formula

(2011) Marçal Soler et al.   Food Analytical Methods

Quantitative detection of viable foodborne E. coli O157:H7, Listeria monocytogenes and Salmonella in fresh-cut vegetables combining propidium monoazide and real-time PCR

(2011) Patricia Elizaquível et al.   FOOD CONTROL

Recent advances in quantitative PCR (qPCR) applications in food microbiology

(2011) Florence Postollec et al.   FOOD MICROBIOLOGY

Detection of Shiga Toxin–Producing Escherichia coli O26, O45, O103, O111, O113, O121, O145, and O157 Serogroups by Multiplex Polymerase Chain Reaction of the wzx Gene of the O-Antigen Gene Cluster

(2011) Chitrita DebRoy et al.   Foodborne Pathogens and Disease

Simultaneous Comparison of Murine Norovirus, Feline Calicivirus, Coliphage MS2, and GII.4 Norovirus to Evaluate the Efficacy of Sodium Hypochlorite Against Human Norovirus on a Fecally Soiled Stainless Steel Surface

(2011) Geun Woo Park et al.   Foodborne Pathogens and Disease

Detection of low numbers of healthy and sub-lethally injured Salmonella enterica in chocolate

(2011) Vicky Jasson et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Review: Norovirus prevalence in Belgian, Canadian and French fresh produce: A threat to human health?

(2011) L. Baert et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The oral metagenome in health and disease

(2011) Pedro Belda-Ferre et al.   ISME Journal

Effect of sublethal heat stress on Salmonella Typhimurium virulence

(2011) S.A. Sirsat et al.   JOURNAL OF APPLIED MICROBIOLOGY

Screening of Fruit Products for Norovirus and the Difficulty of Interpreting Positive PCR Results

(2011) AMBROOS STALS et al.   JOURNAL OF FOOD PROTECTION

Virolysis of Feline Calicivirus and Human GII.4 Norovirus following Chlorine Exposure under Standardized Light Soil Disinfection Conditions

(2011) P. NOWAK et al.   JOURNAL OF FOOD PROTECTION

Physiological Characterization of Campylobacter jejuni under Cold Stresses Conditions: Its Potential for Public Threat

(2011) Warangkhana CHAISOWWONG et al.   JOURNAL OF VETERINARY MEDICAL SCIENCE

Critical studies on binding-based RT-PCR detection of infectious Noroviruses

(2011) Dan Li et al.   JOURNAL OF VIROLOGICAL METHODS

The challenge of merging food safety diagnostic needs with quantitative PCR platforms

(2011) Luca Cocolin et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Nucleic Acid Amplification-Based Methods for Detection of Enteric Viruses: Definition of Controls and Interpretation of Results

(2011) Martin D’Agostino et al.   Food and Environmental Virology

Whole-Genome Comparison Reveals Novel Genetic Elements That Characterize the Genome of Industrial Strains of Saccharomyces cerevisiae

(2011) Anthony R. Borneman et al.   PLoS Genetics

Loss of vtx Genes after the First Subcultivation Step of Verocytotoxigenic Escherichia coli O157 and Non-O157 during Isolation from Naturally Contaminated Fecal Samples

(2011) Maria-Adelheid Joris et al.   Toxins

Comparison of methods for the extraction of DNA from stream epilithic biofilms

(2010) Gavin Lear et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Maximizing Capture Efficiency and Specificity of Magnetic Separation for Mycobacterium avium subsp. paratuberculosis Cells

(2010) A. Foddai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Presence of Enteric Viruses in Source Waters for Drinking Water Production in the Netherlands

(2010) W. J. Lodder et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Use of Propidium Monoazide in Reverse Transcriptase PCR To Distinguish between Infectious and Noninfectious Enteric Viruses in Water Samples

(2010) S. Parshionikar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular aspects of gene transfer and foreign DNA acquisition in prokaryotes with regard to safety issues

(2010) Matthias Brigulla et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Survival of Murine Norovirus and Hepatitis A Virus in Different Types of Manure and Biosolids

(2010) Jie Wei et al.   Foodborne Pathogens and Disease

Bioinformatic tools for using whole genome sequencing as a rapid high resolution diagnostic typing tool when tracing bioterror organisms in the food and feed chain

(2010) Bo Segerman et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Feasibility of methods based on nucleic acid amplification techniques to fulfil the requirements for microbiological analysis of water quality

(2010) J. Jofre et al.   JOURNAL OF APPLIED MICROBIOLOGY

Expression and characterization of cell-signalling molecules in Campylobacter jejuni

(2010) S.M. Moorhead et al.   JOURNAL OF APPLIED MICROBIOLOGY

Quantification methods for Bacillus cereus vegetative cells and spores in the gastrointestinal environment

(2010) Siele Ceuppens et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Discrimination of infectious bacteriophage T4 virus by propidium monoazide real-time PCR

(2010) Mariana Fittipaldi et al.   JOURNAL OF VIROLOGICAL METHODS

Viral Nucleic Acids in Live-Attenuated Vaccines: Detection of Minority Variants and an Adventitious Virus

(2010) J. G. Victoria et al.   JOURNAL OF VIROLOGY

Occurrence of Norovirus and Hepatitis A Virus in U.S. Oysters

(2010) Jacquelina W. Woods et al.   Food and Environmental Virology

Effect of food processing on plant DNA degradation and PCR-based GMO analysis: a review

(2009) Nicolas Gryson   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Inactivation of Enteric Viruses in Minimally Processed Berries and Herbs

(2009) S. Butot et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PCR-Based Method Using Propidium Monoazide To Distinguish Viable from Nonviable Bacillus subtilis Spores

(2009) H. Rawsthorne et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantitative PCR for Determining the Infectivity of Bacteriophage MS2 upon Inactivation by Heat, UV-B Radiation, and Singlet Oxygen: Advantages and Limitations of an Enzymatic Treatment To Reduce False-Positive Results

(2009) B. M. Pecson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantitative Approach to Determining the Contribution of Viable-but-Nonculturable Subpopulations to Malolactic Fermentation Processes

(2009) C. Quiros et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comparison of DNA and RNA quadruplex structures and stabilities

(2009) Astrid Joachimi et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Effect of weak acids on Listeria monocytogenes survival: Evidence for a viable but nonculturable state in response to low pH

(2009) Eilís Cunningham et al.   FOOD CONTROL

Nucleic acids as viability markers for bacteria detection using molecular tools

(2009) Claire Cenciarini-Borde et al.   Future Microbiology

Detection of viable Zygosaccharomyces bailii in fruit juices using ethidium monoazide bromide and real-time PCR

(2009) Helen Rawsthorne et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Development of a PCR assay for the strain-specific identification of probiotic strain Lactobacillus paracasei IMPC2.1

(2009) Angelo Sisto et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Evaluation of the ‘GeneDisc’ real-time PCR system for detection of enterohaemorrhagicEscherichia coli(EHEC) O26, O103, O111, O145 and O157 strains according to their virulence markers and their O- and H-antigen-associated genes

(2009) L. Beutin et al.   JOURNAL OF APPLIED MICROBIOLOGY

Evaluation of murine norovirus as a surrogate for human norovirus and hepatitis A virus in heat inactivation studies

(2009) J. Hewitt et al.   JOURNAL OF APPLIED MICROBIOLOGY

Survival and gene expression of enterotoxigenicEscherichia coliduring long-term incubation in sea water and freshwater

(2009) Å. Lothigius et al.   JOURNAL OF APPLIED MICROBIOLOGY

A Role for Single-Stranded Exonucleases in the Use of DNA as a Nutrient

(2009) V. Palchevskiy et al.   JOURNAL OF BACTERIOLOGY

Multiplex real-time RT-PCR for simultaneous detection of GI/GII noroviruses and murine norovirus 1

(2009) Ambroos Stals et al.   JOURNAL OF VIROLOGICAL METHODS

Microbial awakenings

(2009) Slava S. Epstein   NATURE

Bacterial radiosensitization by using radiation processing in combination with essential oil: Mechanism of action

(2009) Monique Lacroix et al.   RADIATION PHYSICS AND CHEMISTRY

Stress response and pathogenic potential of Campylobacter jejuni cells exposed to starvation

(2009) Anja Klančnik et al.   RESEARCH IN MICROBIOLOGY

Production of Shiga-like toxins in viable but nonculturable Escherichia coli O157:H7

(2009) Yanming Liu et al.   WATER RESEARCH

Application of PCR-Based Methods To Assess the Infectivity of Enteric Viruses in Environmental Samples

(2008) R. A. Rodriguez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel differential and confirmation plating media for Shiga toxin-producingEscherichia coliserotypes O26, O103, O111, O145 and sorbitol-positive and -negative O157

(2008) Björn Possé et al.   FEMS MICROBIOLOGY LETTERS

Kinetics of resuscitation and growth of L. monocytogenes as a tool to select appropriate enrichment conditions as a prior step to rapid detection methods

(2008) V JASSON et al.   FOOD MICROBIOLOGY

Effects of sanitation, freezing and frozen storage on enteric viruses in berries and herbs

(2008) S BUTOT et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Norwalk virus: How infectious is it?

(2008) Peter F.M. Teunis et al.   JOURNAL OF MEDICAL VIROLOGY

Temperature inactivation of Feline calicivirus vaccine strain FCV F-9 in comparison with human noroviruses using an RNA exposure assay and reverse transcribed quantitative real-time polymerase chain reaction—A novel method for predicting virus infectivity

(2008) J.R. Topping et al.   JOURNAL OF VIROLOGICAL METHODS

Influence of Long Time Storage in Mineral Water on RNA Stability of Pseudomonas aeruginosa and Escherichia coli after Heat Inactivation

(2008) Claire Cenciarini et al.   PLoS One

Inactivation of norovirus by chlorine disinfection of water

(2008) Gwy-Am Shin et al.   WATER RESEARCH

An inter-laboratory ring trial for the detection and isolation of Mycobacterium avium subsp. paratuberculosis from raw milk artificially contaminated with naturally infected faeces

(2007) J.A. Donaghy et al.   FOOD MICROBIOLOGY

Evaluation of standard and new chromogenic selective plating media for isolation and identification of Bacillus cereus

(2007) Martina Fricker et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Quantifying fungal viability in air and water samples using quantitative PCR after treatment with propidium monoazide (PMA)

(2007) Stephen Vesper et al.   JOURNAL OF MICROBIOLOGICAL METHODS