Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes

Cryptophyta as major bacterivores in freshwater summer plankton

(2018) Vesna Grujcic et al.   ISME Journal

Competition and niche separation of pelagic bacteria in freshwater habitats

(2017) Jakob Pernthaler   ENVIRONMENTAL MICROBIOLOGY

Strain-specific consumption and transformation of alga-derived dissolved organic matter by members of the Limnohabitans -C and Polynucleobacter -B clusters of Betaproteobacteria

(2017) Karel Horňák et al.   ENVIRONMENTAL MICROBIOLOGY

Distribution and ecological preferences of the freshwater lineage LimA (genus L imnohabitans) revealed by a new double hybridization approach

(2017) Tanja Shabarova et al.   ENVIRONMENTAL MICROBIOLOGY

Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria

(2017) Stefan M Neuenschwander et al.   ISME Journal

Abrupt stop of deep water turnover with lake warming: Drastic consequences for algal primary producers

(2017) Yana Yankova et al.   Scientific Reports

Phosphate and ATP uptake by lake bacteria: does taxonomical identity matter?

(2016) Carina Rofner et al.   ENVIRONMENTAL MICROBIOLOGY

Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria

(2016) Alexander Eiler et al.   ISME Journal

Complete ecological isolation and cryptic diversity in Polynucleobacter bacteria not resolved by 16S rRNA gene sequences

(2016) Martin W Hahn et al.   ISME Journal

Protistan community analysis: key findings of a large-scale molecular sampling

(2016) Lars Grossmann et al.   ISME Journal

Shifts in diversity and function of lake bacterial communities upon glacier retreat

(2016) Hannes Peter et al.   ISME Journal

Microbial eukaryote plankton communities of high-mountain lakes from three continents exhibit strong biogeographic patterns

(2016) Sabine Filker et al.   MOLECULAR ECOLOGY

Vertical partitioning of freshwater bacterioplankton community in a deep mesotrophic lake with a fully oxygenated hypolimnion (Lake Biwa, Japan)

(2016) Yusuke Okazaki et al.   Environmental Microbiology Reports

Seasonal Succession Leads to Habitat-Dependent Differentiation in Ribosomal RNA:DNA Ratios among Freshwater Lake Bacteria

(2016) Vincent J. Denef et al.   Frontiers in Microbiology

Contrasting seasonal and interannual environmental drivers in bacterial communities within a large shallow lake: evidence from a seven year survey

(2015) H Tammert et al.   AQUATIC MICROBIAL ECOLOGY

Microbial diversity and community structure along a lake elevation gradient in Yosemite National Park, California, USA

(2015) Curtis J. Hayden et al.   ENVIRONMENTAL MICROBIOLOGY

Phytoplankton Communities Exhibit a Stronger Response to Environmental Changes than Bacterioplankton in Three Subtropical Reservoirs

(2015) Lemian Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign

(2015) Michaela M Salcher et al.   ISME Journal

Microbial communities reflect temporal changes in cyanobacterial composition in a shallow ephemeral freshwater lake

(2015) Jason Nicholas Woodhouse et al.   ISME Journal

Annual periodicity in planktonic bacterial and archaeal community composition of eutrophic Lake Taihu

(2015) Junfeng Li et al.   Scientific Reports

Ecology and Distribution of Thaumarchaea in the Deep Hypolimnion of Lake Maggiore

(2015) Manuela Coci et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Seasonal variation of planktonic chrysophytes with special focus on Dinobryon.

(2015) Christina Bock et al.   Fottea

Phytoplankton succession affects the composition ofPolynucleobactersubtypes in humic lakes

(2014) Sara F. Paver et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonal growth potential of rare lake water bacteria suggest their disproportional contribution to carbon fluxes

(2014) Stefan M. Neuenschwander et al.   ENVIRONMENTAL MICROBIOLOGY

Rhodoluna lacicola gen. nov., sp. nov., a planktonic freshwater bacterium with stream-lined genome

(2014) M. W. Hahn et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring

(2014) Karel SŠimek et al.   LIMNOLOGY AND OCEANOGRAPHY

Effects of Silver Nitrate and Silver Nanoparticles on a Planktonic Community: General Trends after Short-Term Exposure

(2014) Jens Boenigk et al.   PLoS One

Bacterial Community Composition in Three Freshwater Reservoirs of Different Alkalinity and Trophic Status

(2014) Marc Llirós et al.   PLoS One

Massive Regime Shifts and High Activity of Heterotrophic Bacteria in an Ice-Covered Lake

(2014) Mina Bižić-Ionescu et al.   PLoS One

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Interactions between specific phytoplankton and bacteria affect lake bacterial community succession

(2013) Sara F. Paver et al.   ENVIRONMENTAL MICROBIOLOGY

Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria

(2013) Karel Šimek et al.   ISME Journal

Beyond the Plankton Ecology Group (PEG) Model: Mechanisms Driving Plankton Succession

(2012) Ulrich Sommer et al.   Annual Review of Ecology Evolution and Systematics

The role of planktonicFlavobacteriain processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics

(2012) Timothy J. Williams et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonal dominance of CL500-11 bacterioplankton (phylumChloroflexi) in the oxygenated hypolimnion of Lake Biwa, Japan

(2012) Yusuke Okazaki et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial and phytoplankton nutrient limitation in tropical marine waters, and a coastal lake in Brazil

(2012) Per Carlsson et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Bacterial and Phytoplankton Responses to Nutrient Amendments in a Boreal Lake Differ According to Season and to Taxonomic Resolution

(2012) Sari Peura et al.   PLoS One

Marine Microbes See a Sea of Gradients

(2012) R. Stocker   SCIENCE

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Harmful filamentous cyanobacteria favoured by reduced water turnover with lake warming

(2012) Thomas Posch et al.   Nature Climate Change

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

Alga-Derived Substrates Select for Distinct Betaproteobacterial Lineages and Contribute to Niche Separation in Limnohabitans Strains

(2011) Karel Šimek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom

(2011) Ester M. Eckert et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria ‘that rule the waves’ (LD12)

(2011) Michaela M Salcher et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Differential Response of High-Elevation Planktonic Bacterial Community Structure and Metabolism to Experimental Nutrient Enrichment

(2011) Craig E. Nelson et al.   PLoS One

Local and regional factors influencing bacterial community assembly

(2011) Eva S. Lindström et al.   Environmental Microbiology Reports

Effects of inorganic and organic nutrient inputs on bacterioplankton community composition along a latitudinal transect in the Atlantic Ocean

(2010) E Teira et al.   AQUATIC MICROBIAL ECOLOGY

Nitrogen and Phosphorus Limitation of Phytoplankton Growth in New Zealand Lakes: Implications for Eutrophication Control

(2010) Jonathan M. Abell et al.   ECOSYSTEMS

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity

(2010) VIOLA NOLTE et al.   MOLECULAR ECOLOGY

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

(2010) RALPH MEDINGER et al.   MOLECULAR ECOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Low Taxon Richness of Bacterioplankton in High-Altitude Lakes of the Eastern Tibetan Plateau, with a Predominance of Bacteroidetes and Synechococcus spp.

(2009) P. Xing et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A small population of planktonicFlavobacteriawith disproportionally high growth during the spring phytoplankton bloom in a prealpine lake

(2009) Michael Zeder et al.   ENVIRONMENTAL MICROBIOLOGY

Long-term phytoplankton community changes in a deep subalpine lake: responses to nutrient availability and climatic fluctuations

(2009) NICO SALMASO   FRESHWATER BIOLOGY

PCR-DGGE Fingerprinting Analysis of Plankton Communities and Its Relationship to Lake Trophic Status

(2009) Li Wu et al.   INTERNATIONAL REVIEW OF HYDROBIOLOGY

Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir

(2008) K Simek et al.   AQUATIC MICROBIAL ECOLOGY

Top-down and bottom-up induced shifts in bacterial abundance, production and community composition in an experimentally divided humic lake

(2008) Hans-Peter Grossart et al.   ENVIRONMENTAL MICROBIOLOGY

Spatio-temporal niche separation of planktonicBetaproteobacteriain an oligo-mesotrophic lake

(2008) Michaela M. Salcher et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial ‘cosmopolitanism’ and importance of local environmental factors for community composition in remote high-altitude lakes

(2008) RUBEN SOMMARUGA et al.   FRESHWATER BIOLOGY

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

(2008) Z. M.-P. Lee et al.   NUCLEIC ACIDS RESEARCH

Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

(2008) J. A. Bryant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA