Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

Seasonality in Ocean Microbial Communities

(2012) S. J. Giovannoni et al.   SCIENCE

Differing Growth Responses of Major Phylogenetic Groups of Marine Bacteria to Natural Phytoplankton Blooms in the Western North Pacific Ocean

(2011) Yuya Tada et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

TonB or not TonB: is that the question?This paper is one of a selection of papers published in a Special Issue entitled CSBMCB 53rd Annual Meeting — Membrane Proteins in Health and Disease, and has undergone the Journal’s usual peer review process.

(2011) Karla D. Krewulak et al.   Biochemistry and Cell Biology

HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors

(2011) Yuan Zhang et al.   BMC BIOINFORMATICS

Recent insights into iron import by bacteria

(2011) Volkmar Braun et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Automated sample area definition for high-throughput microscopy

(2011) M. Zeder et al.   CYTOMETRY PART A

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean

(2011) Paola R. Gómez-Pereira et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community transcription patterns during a marine phytoplankton bloom

(2011) Johanna M. Rinta-Kanto et al.   ENVIRONMENTAL MICROBIOLOGY

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Non-cooperative behaviour of bacteria prevents efficient phosphorus utilization of planktonic communities

(2011) J. Tittel et al.   JOURNAL OF PLANKTON RESEARCH

Novel pathway for assimilation of dimethylsulphoniopropionate widespread in marine bacteria

(2011) Chris R. Reisch et al.   NATURE

Taxonomic classification of metagenomic shotgun sequences with CARMA3

(2011) Wolfgang Gerlach et al.   NUCLEIC ACIDS RESEARCH

Particle tracking in the vicinity of Helgoland, North Sea: a model comparison

(2011) Ulrich Callies et al.   OCEAN DYNAMICS

Regulatory Effects of IFN-β on the Development of Experimental Autoimmune Uveoretinitis in B10RIII Mice

(2011) Min Sun et al.   PLoS One

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

Refinements to Label Free Proteome Quantitation: How to Deal with Peptides Shared by Multiple Proteins

(2010) Ying Zhang et al.   ANALYTICAL CHEMISTRY

Microbial Extracellular Enzymes and the Marine Carbon Cycle

(2010) Carol Arnosti   Annual Review of Marine Science

Differences in carbohydrate profiles in batch culture grown planktonic and biofilm cells ofAmphora rostrataWm. Sm

(2010) Vishwas B. Khodse et al.   BIOFOULING

Artificial and natural duplicates in pyrosequencing reads of metagenomic data

(2010) Beifang Niu et al.   BMC BIOINFORMATICS

Reinekea aestuarii sp. nov., isolated from tidal flat sediment

(2010) A. Choi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Formosa spongicola sp. nov., isolated from the marine sponge Hymeniacidon flavia

(2010) B.-J. Yoon et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics

(2010) Marc Weber et al.   ISME Journal

Distribution of Roseobacter RCA and SAR11 lineages in the North Sea and characteristics of an abundant RCA isolate

(2010) Helge-Ansgar Giebel et al.   ISME Journal

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

(2010) Robert M Morris et al.   ISME Journal

Genome characteristics of a generalist marine bacterial lineage

(2010) Ryan J Newton et al.   ISME Journal

Resilience of North Sea phytoplankton spring bloom dynamics: An analysis of long-term data at Helgoland Roads

(2010) Karen Helen Wiltshire et al.   LIMNOLOGY AND OCEANOGRAPHY

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Identification of Carbohydrate Metabolism Genes in the Metagenome of a Marine Biofilm Community Shown to Be Dominated by Gammaproteobacteria and Bacteroidetes

(2010) Jennifer L. Edwards et al.   Genes

Regional Meteorological–Marine Reanalyses and Climate Change Projections

(2009) Ralf Weisse et al.   BULLETIN OF THE AMERICAN METEOROLOGICAL SOCIETY

Helgoland Roads, North Sea: 45 Years of Change

(2009) Karen Helen Wiltshire et al.   Estuaries and Coasts

Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm

(2009) Eric C. Martens et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Diversity, ecology, and genomics of the Roseobacter clade: a short overview

(2008) Thorsten Brinkhoff et al.   ARCHIVES OF MICROBIOLOGY

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

(2008) Sarah M Sowell et al.   ISME Journal

Phylogenetic classification of short environmental DNA fragments

(2008) Lutz Krause et al.   NUCLEIC ACIDS RESEARCH

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata

(2008) Lynette Hirschman et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

(2008) J. M. Gonzalez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New substrates for TonB-dependent transport: do we only see the ‘tip of the iceberg’?

(2008) Kristine Schauer et al.   TRENDS IN BIOCHEMICAL SCIENCES