Vertical partitioning of freshwater bacterioplankton community in a deep mesotrophic lake with a fully oxygenated hypolimnion (Lake Biwa, Japan)

Identification, enumeration and diversity of nitrifying planktonic archaea and bacteria in trophic end members of the Laurentian Great Lakes

(2016) Maitreyee Mukherjee et al.   JOURNAL OF GREAT LAKES RESEARCH

High contribution of Synechococcus to phytoplankton biomass in the aphotic hypolimnion in a deep freshwater lake (Lake Biwa, Japan)

(2015) H Takasu et al.   AQUATIC MICROBIAL ECOLOGY

Distribution patterns and environmental correlates of Thaumarchaeota abundance in six deep subalpine lakes

(2015) Cristiana Callieri et al.   AQUATIC SCIENCES

The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign

(2015) Michaela M Salcher et al.   ISME Journal

Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage

(2015) Jennifer Hiras et al.   ISME Journal

Ecology and Distribution of Thaumarchaea in the Deep Hypolimnion of Lake Maggiore

(2015) Manuela Coci et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

RNA Preservation Agents and Nucleic Acid Extraction Method Bias Perceived Bacterial Community Composition

(2015) Ann McCarthy et al.   PLoS One

Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage

(2014) Trevor W Ghylin et al.   ISME Journal

Same same but different: ecological niche partitioning of planktonic freshwater prokaryotes

(2014) Michaela M. Salcher   JOURNAL OF LIMNOLOGY

A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring

(2014) Karel SŠimek et al.   LIMNOLOGY AND OCEANOGRAPHY

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Seasonality and environmental control of freshwater SAR11 (LD12) in a temperate lake (Lake Erken, Sweden)

(2013) F Heinrich et al.   AQUATIC MICROBIAL ECOLOGY

Community shifts of actively growing lake bacteria after N-acetyl-glucosamine addition: improving the BrdU-FACS method

(2013) Yuya Tada et al.   ISME Journal

Biogeochemical control on fluorescent dissolved organic matter dynamics in a large freshwater lake (Lake Biwa, Japan)

(2013) Shoji D. Thottathil et al.   LIMNOLOGY AND OCEANOGRAPHY

The Diversity of the Limnohabitans Genus, an Important Group of Freshwater Bacterioplankton, by Characterization of 35 Isolated Strains

(2013) Vojtěch Kasalický et al.   PLoS One

Ecological niche separation in the Polynucleobacter subclusters linked to quality of dissolved organic matter: a demonstration using a high sensitivity cultivation-based approach

(2012) Keiji Watanabe et al.   ENVIRONMENTAL MICROBIOLOGY

The high resilience of the bacterioplankton community in the face of a catastrophic disturbance by a heavy Microcystis bloom

(2012) Huabing Li et al.   FEMS MICROBIOLOGY ECOLOGY

Seasonal dominance of CL500-11 bacterioplankton (phylumChloroflexi) in the oxygenated hypolimnion of Lake Biwa, Japan

(2012) Yusuke Okazaki et al.   FEMS MICROBIOLOGY ECOLOGY

Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton

(2012) Sarahi L Garcia et al.   ISME Journal

Vertical segregation and phylogenetic characterization of ammonia-oxidizing Archaea in a deep oligotrophic lake

(2012) Jean-Christophe Auguet et al.   ISME Journal

In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake

(2012) Michaela M Salcher et al.   ISME Journal

The Passive Yet Successful Way of Planktonic Life: Genomic and Experimental Analysis of the Ecology of a Free-Living Polynucleobacter Population

(2012) Martin W. Hahn et al.   PLoS One

Spatiotemporal Changes in the Structure and Composition of a Less-Abundant Bacterial Phylum (Planctomycetes) in Two Perialpine Lakes

(2011) Thomas Pollet et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Alga-Derived Substrates Select for Distinct Betaproteobacterial Lineages and Contribute to Niche Separation in Limnohabitans Strains

(2011) Karel Šimek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom

(2011) Ester M. Eckert et al.   ENVIRONMENTAL MICROBIOLOGY

High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton

(2011) Manuel Martinez-Garcia et al.   ISME Journal

Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria ‘that rule the waves’ (LD12)

(2011) Michaela M Salcher et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Vertical and longitudinal distribution patterns of different bacterioplankton populations in a canyon-shaped, deep prealpine lake

(2011) Michaela M. Salcher et al.   LIMNOLOGY AND OCEANOGRAPHY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function

(2011) John A. Fuerst et al.   NATURE REVIEWS MICROBIOLOGY

Quantitative dominance of seasonally persistent filamentous cyanobacteria (Planktothrix rubescens) in the microbial assemblages of a temperate lake

(2010) Silke Van den Wyngaert et al.   LIMNOLOGY AND OCEANOGRAPHY

Comparison of the structure and composition of bacterial communities from temperate and tropical freshwater ecosystems

(2009) Jean-F. Humbert et al.   ENVIRONMENTAL MICROBIOLOGY

A small population of planktonicFlavobacteriawith disproportionally high growth during the spring phytoplankton bloom in a prealpine lake

(2009) Michael Zeder et al.   ENVIRONMENTAL MICROBIOLOGY

Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria

(2009) Adrian K Sharma et al.   ISME Journal

Autochthonous origin of semi-labile dissolved organic carbon in a large monomictic lake (Lake Biwa): carbon stable isotopic evidence

(2009) Koh Maki et al.   LIMNOLOGY

Comparative analysis of genome fragments of Acidobacteria from deep Mediterranean plankton

(2008) Achim Quaiser et al.   ENVIRONMENTAL MICROBIOLOGY

Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems

(2008) Nof Atamna-Ismaeel et al.   ISME Journal