Microbial eukaryote plankton communities of high-mountain lakes from three continents exhibit strong biogeographic patterns

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

(2015) Ramon Massana et al.   ENVIRONMENTAL MICROBIOLOGY

Marked seasonality and high spatial variability of protist communities in shallow freshwater systems

(2015) Marianne Simon et al.   ISME Journal

Morphological and Molecular Diversification of Asian Endemic Difflugia tuberspinifera (Amoebozoa, Arcellinida): A Case of Fast Morphological Evolution in Protists?

(2015) Fatma Gomaa et al.   PROTIST

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Protistan diversity in a permanently stratified meromictic lake (Lake Alatsee, SW Germany)

(2014) Andreas Oikonomou et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial biogeography: the end of the ubiquitous dispersal hypothesis?

(2014) Christopher J. van der Gast   ENVIRONMENTAL MICROBIOLOGY

Global ubiquity and local endemism of free-living terrestrial protists: phylogeographic assessment of the streptophyte algaKlebsormidium

(2014) David Ryšánek et al.   ENVIRONMENTAL MICROBIOLOGY

Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds

(2014) Sabine Filker et al.   EXTREMOPHILES

Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context

(2014) Micah Dunthorn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

(2014) Michael C. Nelson et al.   PLoS One

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology

(2013) Thorsten Stoeck et al.   ENVIRONMENTAL MICROBIOLOGY

Mantel test in population genetics

(2013) José Alexandre F. Diniz-Filho et al.   GENETICS AND MOLECULAR BIOLOGY

Robust estimation of microbial diversity in theory and in practice

(2013) Bart Haegeman et al.   ISME Journal

Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity

(2013) Najwa Taib et al.   PLoS One

Intercontinental Dispersal of Bacteria and Archaea by Transpacific Winds

(2012) David J. Smith et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetic diversity of planktonic eukaryotes in high mountain lakes (Central Pyrenees, Spain)

(2012) Xavier Triadó-Margarit et al.   ENVIRONMENTAL MICROBIOLOGY

Global biogeography of highly diverse protistan communities in soil

(2012) Scott T Bates et al.   ISME Journal

Microbial hitchhikers on intercontinental dust: catching a lift in Chad

(2012) Jocelyne Favet et al.   ISME Journal

Southern Ocean Biogeography of Tintinnid Ciliates of the Marine Plankton

(2012) John R. Dolan et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Meta-analyses of environmental sequence data identify anoxia and salinity as parameters shaping ciliate communities

(2012) Dominik Forster et al.   SYSTEMATICS AND BIODIVERSITY

Diversity and endemism of ciliates inhabiting Neotropical phytotelmata

(2012) Micah Dunthorn et al.   SYSTEMATICS AND BIODIVERSITY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Microbial eukaryote life in the new hypersaline deep-sea basin Thetis

(2011) Alexandra Stock et al.   EXTREMOPHILES

Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota

(2011) ALBERT BARBERÁN et al.   MOLECULAR ECOLOGY

JAGUC — A SOFTWARE PACKAGE FOR ENVIRONMENTAL DIVERSITY ANALYSES

(2011) MARKUS E. NEBEL et al.   Journal of Bioinformatics and Computational Biology

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global phylogenetic community structure and β-diversity patterns in surface bacterioplankton metacommunities

(2009) A Barberán et al.   AQUATIC MICROBIAL ECOLOGY

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

Distribution and seasonal fluctuations in the aquatic biodiversity of the southern Altiplano

(2009) Marcela Márquez-García et al.   LIMNOLOGICA

Genetic Diversity of Eukaryotic Plankton Assemblages in Eastern Tibetan Lakes Differing by their Salinity and Altitude

(2009) Qinglong L. Wu et al.   MICROBIAL ECOLOGY

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Genetic Diversity Patterns in Five Protist Species Occurring in Lakes

(2009) Ramiro Logares et al.   PROTIST

Infrequent marine–freshwater transitions in the microbial world

(2009) Ramiro Logares et al.   TRENDS IN MICROBIOLOGY

Unveiling new microbial eukaryotes in the surface ocean

(2008) Ramon Massana et al.   CURRENT OPINION IN MICROBIOLOGY

Microbial eukaryotes in the hypersaline anoxic L'Atalante deep-sea basin

(2008) Eva Alexander et al.   ENVIRONMENTAL MICROBIOLOGY

Multigene phylogenies of clonal Spumella-like strains, a cryptic heterotrophic nanoflagellate, isolated from different geographical regions

(2008) T. Stoeck et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY