The ω-transaminase engineering database (oTAED): A navigation tool in protein sequence and structure space
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
The ω-transaminase engineering database (oTAED): A navigation tool in protein sequence and structure space
Authors
Keywords
-
Journal
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 86, Issue 5, Pages 566-580
Publisher
Wiley
Online
2018-02-09
DOI
10.1002/prot.25477
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A Novel highly thermostable branched-chain amino acid aminotransferase from the crenarchaeon Vulcanisaeta moutnovskia
- (2017) Tatiana N. Stekhanova et al. ENZYME AND MICROBIAL TECHNOLOGY
- Transaminase biocatalysis: optimization and application
- (2017) Fei Guo et al. GREEN CHEMISTRY
- Percolation in protein sequence space
- (2017) Patrick C. F. Buchholz et al. PLoS One
- Active Site Engineering of ω-Transaminase Guided by Docking Orientation Analysis and Virtual Activity Screening
- (2017) Sang-Woo Han et al. ACS Catalysis
- Discovery, Engineering, and Synthetic Application of Transaminase Biocatalysts
- (2017) Iustina Slabu et al. ACS Catalysis
- Catalytic Promiscuity of Transaminases: Preparation of Enantioenriched β-Fluoroamines by Formal Tandem Hydrodefluorination/Deamination
- (2016) Aníbal Cuetos et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- A β-Alanine Catabolism Pathway Containing a Highly Promiscuous ω-Transaminase in the 12-Aminododecanate-Degrading Pseudomonas sp. Strain AAC
- (2016) Matthew Wilding et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Characterization of Four New Distinct ω-Transaminases from Pseudomonas putida NBRC 14164 for Kinetic Resolution of Racemic Amines and Amino Alcohols
- (2016) Hua-Lei Wu et al. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY
- Structural Basis of the Substrate Range and Enantioselectivity of Two (S)-Selective ω-Transaminases
- (2016) Niels van Oosterwijk et al. BIOCHEMISTRY
- BioCatNet: A Database System for the Integration of Enzyme Sequences and Biocatalytic Experiments
- (2016) Patrick C. F. Buchholz et al. CHEMBIOCHEM
- One-step purification and immobilization of a β-amino acid aminotransferase using magnetic (M-PVA) beads
- (2016) Sarah-Marie Dold et al. ENGINEERING IN LIFE SCIENCES
- Biochemical characterization of thermostable ω-transaminase from Sphaerobacter thermophilus and its application for producing aromatic β- and γ-amino acids
- (2016) Sam Mathew et al. ENZYME AND MICROBIAL TECHNOLOGY
- First structure of archaeal branched-chain amino acid aminotransferase from Thermoproteus uzoniensis specific for l-amino acids and R-amines
- (2016) Konstantin M. Boyko et al. EXTREMOPHILES
- Identification of (S)-selective transaminases for the asymmetric synthesis of bulky chiral amines
- (2016) Ioannis V. Pavlidis et al. Nature Chemistry
- Protein-engineering of an amine transaminase for the stereoselective synthesis of a pharmaceutically relevant bicyclic amine
- (2016) Martin S. Weiß et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- Identification of novel thermostable ω-transaminase and its application for enzymatic synthesis of chiral amines at high temperature
- (2016) Sam Mathew et al. RSC Advances
- Discovery and structural characterisation of new fold type IV-transaminases exemplify the diversity of this enzyme fold
- (2016) Tea Pavkov-Keller et al. Scientific Reports
- Mechanism-Guided Engineering of ω-Transaminase to Accelerate Reductive Amination of Ketones
- (2015) Sang-Woo Han et al. ADVANCED SYNTHESIS & CATALYSIS
- Active-Site Engineering of ω-Transaminase for Production of Unnatural Amino Acids Carrying a Side Chain Bulkier than an Ethyl Substituent
- (2015) Sang-Woo Han et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Bioinformatic analysis of a PLP-dependent enzyme superfamily suitable for biocatalytic applications
- (2015) Fabian Steffen-Munsberg et al. BIOTECHNOLOGY ADVANCES
- Engineering the Active Site of the Amine Transaminase fromVibrio fluvialisfor the Asymmetric Synthesis of Aryl-Alkyl Amines and Amino Alcohols
- (2015) Alberto Nobili et al. ChemCatChem
- Single active-site mutants are sufficient to enhance serine:pyruvate α-transaminase activity in an ω-transaminase
- (2015) Dawid Deszcz et al. FEBS Journal
- Production of chiral β-amino acids using ω-transaminase from Burkholderia graminis
- (2015) Sam Mathew et al. JOURNAL OF BIOTECHNOLOGY
- Structural Determinants for the Non-Canonical Substrate Specificity of the ω-Transaminase fromParacoccus denitrificans
- (2014) Eul-Soo Park et al. ADVANCED SYNTHESIS & CATALYSIS
- Chiral Amine Synthesis Using ω-Transaminases: An Amine Donor that Displaces Equilibria and Enables High-Throughput Screening
- (2014) Anthony P. Green et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Metabolically driven equilibrium shift of asymmetric amination of ketones by ω-transaminase using alanine as an amino donor
- (2014) Sang-Woo Han et al. BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY
- Synthesis of pharmaceutically relevant 17-α-amino steroids using an ω-transaminase
- (2014) Nina Richter et al. CHEMICAL COMMUNICATIONS
- Structural and biochemical characterization of the dual substrate recognition of the (R)-selective amine transaminase fromAspergillus fumigatus
- (2014) Lilly Skalden et al. FEBS Journal
- The substrate specificity, enantioselectivity and structure of the (R)-selective amine : pyruvate transaminase fromNectria haematococca
- (2014) Christopher Sayer et al. FEBS Journal
- Exploring the potential of endophytes from medicinal plants as sources of antimycobacterial compounds
- (2014) Alfonsus Alvin et al. MICROBIOLOGICAL RESEARCH
- Crystal Structure of an (R)-Selective ω-Transaminase from Aspergillus terreus
- (2014) Andrzej Łyskowski et al. PLoS One
- Crystallographic characterization of the (R)-selective amine transaminase fromAspergillus fumigatus
- (2014) Maren Thomsen et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Structural studies ofPseudomonasandChromobacteriumω-aminotransferases provide insights into their differing substrate specificity
- (2013) Christopher Sayer et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Two Steps in One Pot: Enzyme Cascade for the Synthesis of Nor(pseudo)ephedrine from Inexpensive Starting Materials
- (2013) Torsten Sehl et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Artificial Multi-Enzyme Networks for the Asymmetric Amination ofsec-Alcohols
- (2013) Katharina Tauber et al. CHEMISTRY-A EUROPEAN JOURNAL
- BacDive—the Bacterial Diversity Metadatabase
- (2013) Carola Söhngen et al. NUCLEIC ACIDS RESEARCH
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- ω-Transaminase-catalyzed asymmetric synthesis of unnatural amino acids using isopropylamine as an amino donor
- (2013) Eul-Soo Park et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- Crystal structure of the ω-aminotransferase fromParacoccus denitrificansand its phylogenetic relationship with other class III amino- transferases that have biotechnological potential
- (2013) Christian Rausch et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Asymmetric Bio-amination of Ketones in Organic Solvents
- (2012) Francesco G. Mutti et al. ADVANCED SYNTHESIS & CATALYSIS
- Biochemical Properties and Crystal Structure of a β-Phenylalanine Aminotransferase from Variovorax paradoxus
- (2012) Ciprian G. Crismaru et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metabolic characteristics of the species Variovorax paradoxus
- (2012) Barbara Satola et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Features and technical applications of ω-transaminases
- (2012) M. Shaheer Malik et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- A standard numbering scheme for thiamine diphosphate-dependent decarboxylases
- (2012) Constantin Vogel et al. BMC BIOCHEMISTRY
- Revealing the Structural Basis of Promiscuous Amine Transaminase Activity
- (2012) Fabian Steffen-Munsberg et al. ChemCatChem
- Key Amino Acid Residues for Reversed or Improved Enantiospecificity of an ω-Transaminase
- (2012) Maria Svedendahl Humble et al. ChemCatChem
- Crystal structures of the Chromobacterium violaceumω-transaminase reveal major structural rearrangements upon binding of coenzyme PLP
- (2012) Maria S. Humble et al. FEBS Journal
- Optimization to Low Temperature Activity in Psychrophilic Enzymes
- (2012) Caroline Struvay et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Structural Determinants of the β-Selectivity of a Bacterial Aminotransferase
- (2012) Gjalt G. Wybenga et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Chromobacterium violaceum ω-transaminase variant Trp60Cys shows increased specificity for (S)-1-phenylethylamine and 4′-substituted acetophenones, and follows Swain–Lupton parameterisation
- (2012) Karim Engelmark Cassimjee et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- Redesigning and characterizing the substrate specificity and activity of Vibrio fluvialis aminotransferase for the synthesis of imagabalin
- (2012) K. S. Midelfort et al. PROTEIN ENGINEERING DESIGN & SELECTION
- Improved chemoenzymatic asymmetric synthesis of (S)-Rivastigmine
- (2012) Michael Fuchs et al. TETRAHEDRON
- Transaminases for the synthesis of enantiopure beta-amino acids
- (2012) Jens Rudat et al. AMB Express
- Stereoselectivity of Four (R)-Selective Transaminases for the Asymmetric Amination of Ketones
- (2011) Francesco G. Mutti et al. ADVANCED SYNTHESIS & CATALYSIS
- A novel transaminase, (R)-amine:pyruvate aminotransferase, from Arthrobacter sp. KNK168 (FERM BP-5228): purification, characterization, and gene cloning
- (2011) Akira Iwasaki et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Molecular determinants for substrate selectivity of ω-transaminases
- (2011) Eul-Soo Park et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
- (2011) F. Sievers et al. Molecular Systems Biology
- Pseudomonas aeruginosa 4-Amino-4-Deoxychorismate Lyase: Spatial Conservation of an Active Site Tyrosine and Classification of Two Types of Enzyme
- (2011) Patrick E. F. O'Rourke et al. PLoS One
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Reversed Enantiopreference of an ω-Transaminase by a Single-Point Mutation
- (2010) Maria Svedendahl et al. ChemCatChem
- Rational assignment of key motifs for function guides in silico enzyme identification
- (2010) Matthias Höhne et al. Nature Chemical Biology
- GenBank
- (2010) D. A. Benson et al. NUCLEIC ACIDS RESEARCH
- Biocatalytic Asymmetric Synthesis of Chiral Amines from Ketones Applied to Sitagliptin Manufacture
- (2010) C. K. Savile et al. SCIENCE
- ω-Transaminases for the synthesis of non-racemic α-chiral primary amines
- (2010) Dominik Koszelewski et al. TRENDS IN BIOTECHNOLOGY
- Rapid and Sensitive Kinetic Assay for Characterization of ω-Transaminases
- (2009) Sebastian Schätzle et al. ANALYTICAL CHEMISTRY
- The B6 database: a tool for the description and classification of vitamin B6-dependent enzymatic activities and of the corresponding protein families
- (2009) Riccardo Percudani et al. BMC BIOINFORMATICS
- Subcellular localization and expression of multiple tomato γ-aminobutyrate transaminases that utilize both pyruvate and glyoxylate
- (2009) Shawn M. Clark et al. JOURNAL OF EXPERIMENTAL BOTANY
- Deracemization of Mexiletine Biocatalyzed by ω-Transaminases
- (2009) Dominik Koszelewski et al. ORGANIC LETTERS
- Enantiocomplementary Enzymes: Classification, Molecular Basis for Their Enantiopreference, and Prospects for Mirror-Image Biotransformations
- (2008) Paul F. Mugford et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started