Targeted Nucleotide Editing Technologies for Microbial Metabolic Engineering
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Title
Targeted Nucleotide Editing Technologies for Microbial Metabolic Engineering
Authors
Keywords
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Journal
Biotechnology Journal
Volume -, Issue -, Pages 1700596
Publisher
Wiley
Online
2018-06-04
DOI
10.1002/biot.201700596
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Note: Only part of the references are listed.- EasyCloneYALI: CRISPR/Cas9-Based Synthetic Toolbox for Engineering of the Yeast Yarrowia lipolytica
- (2018) Carina Holkenbrink et al. Biotechnology Journal
- EasyCloneYALI: CRISPR/Cas9-Based Synthetic Toolbox for Engineering of the Yeast Yarrowia lipolytica
- (2018) Carina Holkenbrink et al. Biotechnology Journal
- Deaminase-mediated multiplex genome editing in Escherichia coli
- (2018) Satomi Banno et al. Nature Microbiology
- Evolved Cas9 variants with broad PAM compatibility and high DNA specificity
- (2018) Johnny H. Hu et al. NATURE
- Rapid and Efficient Genome Editing in Staphylococcus aureus by Using an Engineered CRISPR/Cas9 System
- (2017) Weizhong Chen et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The CRISPR/Cas9-facilitated multiplex pathway optimization (CFPO) technique and its application to improve the Escherichia coli xylose utilization pathway
- (2017) Xinna Zhu et al. METABOLIC ENGINEERING
- CRISPR EnAbled Trackable genome Engineering for isopropanol production in Escherichia coli
- (2017) Liya Liang et al. METABOLIC ENGINEERING
- Large scale validation of an efficient CRISPR/Cas-based multi gene editing protocol in Escherichia coli
- (2017) Francesca Zerbini et al. Microbial Cell Factories
- CRISPR interference-guided multiplex repression of endogenous competing pathway genes for redirecting metabolic flux in Escherichia coli
- (2017) Seong Keun Kim et al. Microbial Cell Factories
- Increasing on-target cleavage efficiency for CRISPR/Cas9-induced large fragment deletion in Myxococcus xanthus
- (2017) Ying-jie Yang et al. Microbial Cell Factories
- CRISPRi-mediated metabolic engineering of E. coli for O-methylated anthocyanin production
- (2017) Brady F. Cress et al. Microbial Cell Factories
- Development of a CRISPR/Cas9 genome editing toolbox for Corynebacterium glutamicum
- (2017) Jiao Liu et al. Microbial Cell Factories
- Methods and Applications of CRISPR-Mediated Base Editing in Eukaryotic Genomes
- (2017) Gaelen T. Hess et al. MOLECULAR CELL
- Precise Editing of a Target Base in the Rice Genome Using a Modified CRISPR/Cas9 System
- (2017) Yuming Lu et al. Molecular Plant
- Generation of Targeted Point Mutations in Rice by a Modified CRISPR/Cas9 System
- (2017) Jingying Li et al. Molecular Plant
- High‐throughput CRISPRi phenotyping identifies new essential genes in Streptococcus pneumoniae
- (2017) Xue Liu et al. Molecular Systems Biology
- Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
- (2017) Nicole M. Gaudelli et al. NATURE
- Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion
- (2017) Yuan Zong et al. NATURE BIOTECHNOLOGY
- Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion
- (2017) Zenpei Shimatani et al. NATURE BIOTECHNOLOGY
- Increasing the genome-targeting scope and precision of base editing with engineered Cas9-cytidine deaminase fusions
- (2017) Y Bill Kim et al. NATURE BIOTECHNOLOGY
- Highly efficient RNA-guided base editing in mouse embryos
- (2017) Kyoungmi Kim et al. NATURE BIOTECHNOLOGY
- Genome-wide target specificities of CRISPR RNA-guided programmable deaminases
- (2017) Daesik Kim et al. NATURE BIOTECHNOLOGY
- CRISPR–Cas9 strategy for activation of silent Streptomyces biosynthetic gene clusters
- (2017) Mingzi M Zhang et al. Nature Chemical Biology
- Beyond Native Cas9: Manipulating Genomic Information and Function
- (2017) Hitoshi Mitsunobu et al. TRENDS IN BIOTECHNOLOGY
- Characterizing a thermostable Cas9 for bacterial genome editing and silencing
- (2017) Ioannis Mougiakos et al. Nature Communications
- Combinatorial metabolic engineering using an orthogonal tri-functional CRISPR system
- (2017) Jiazhang Lian et al. Nature Communications
- Programmable base editing of zebrafish genome using a modified CRISPR-Cas9 system
- (2017) Yihan Zhang et al. Nature Communications
- Improving the DNA specificity and applicability of base editing through protein engineering and protein delivery
- (2017) Holly A. Rees et al. Nature Communications
- CRISPR-Cpf1 assisted genome editing of Corynebacterium glutamicum
- (2017) Yu Jiang et al. Nature Communications
- Managing the SOS Response for Enhanced CRISPR-Cas-Based Recombineering in E. coli through Transient Inhibition of Host RecA Activity
- (2017) Eirik Adim Moreb et al. ACS Synthetic Biology
- Combining CRISPR and CRISPRi Systems for Metabolic Engineering of E. coli and 1,4-BDO Biosynthesis
- (2017) Meng-Ying Wu et al. ACS Synthetic Biology
- Efficient Genome Editing of a Facultative Thermophile Using Mesophilic spCas9
- (2017) Ioannis Mougiakos et al. ACS Synthetic Biology
- Genome-Wide Abolishment of Mobile Genetic Elements Using Genome Shuffling and CRISPR/Cas-Assisted MAGE Allows the Efficient Stabilization of a Bacterial Chassis
- (2017) Kinga Umenhoffer et al. ACS Synthetic Biology
- CRISPRi–sRNA: Transcriptional–Translational Regulation of Extracellular Electron Transfer in Shewanella oneidensis
- (2017) Yingxiu Cao et al. ACS Synthetic Biology
- Effective gene editing by high-fidelity base editor 2 in mouse zygotes
- (2017) Puping Liang et al. Protein & Cell
- CRISPR/Cas9-Based Counterselection Boosts Recombineering Efficiency in Pseudomonas putida
- (2017) Tomás Aparicio et al. Biotechnology Journal
- Cas9 Nickase-Assisted RNA Repression Enables Stable and Efficient Manipulation of Essential Metabolic Genes in Clostridium cellulolyticum
- (2017) Tao Xu et al. Frontiers in Microbiology
- A Novel and Efficient Method for Bacteria Genome Editing Employing both CRISPR/Cas9 and an Antibiotic Resistance Cassette
- (2017) Hong Zhang et al. Frontiers in Microbiology
- A Highly Efficient CRISPR-Cas9-Mediated Large Genomic Deletion in Bacillus subtilis
- (2017) Younju So et al. Frontiers in Microbiology
- Programmable transcriptional repression in mycobacteria using an orthogonal CRISPR interference platform
- (2017) Jeremy M. Rock et al. Nature Microbiology
- Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C:G-to-T:A base editors with higher efficiency and product purity
- (2017) Alexis C. Komor et al. Science Advances
- Development of a comprehensive set of tools for genome engineering in a cold- and thermo-tolerant Kluyveromyces marxianus yeast strain
- (2017) Yumiko Nambu-Nishida et al. Scientific Reports
- CRISPR/Cas9-assisted gRNA-free one-step genome editing with no sequence limitations and improved targeting efficiency
- (2017) Dongdong Zhao et al. Scientific Reports
- Development of a CRISPR-Cas9 Tool Kit for Comprehensive Engineering of Bacillus subtilis
- (2016) Adam W. Westbrook et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Editing of the Bacillus subtilis Genome by the CRISPR-Cas9 System
- (2016) Josef Altenbuchner APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Enhanced integration of large DNA intoE. colichromosome by CRISPR/Cas9
- (2016) Mu-En Chung et al. BIOTECHNOLOGY AND BIOENGINEERING
- Gene transcription repression inClostridium beijerinckiiusing CRISPR-dCas9
- (2016) Yi Wang et al. BIOTECHNOLOGY AND BIOENGINEERING
- CRISPR-based genome editing and expression control systems inClostridium acetobutylicumandClostridium beijerinckii
- (2016) Qi Li et al. Biotechnology Journal
- EasyClone-MarkerFree: A vector toolkit for marker-less integration of genes intoSaccharomyces cerevisiaevia CRISPR-Cas9
- (2016) Mathew M Jessop-Fabre et al. Biotechnology Journal
- Engineering Cellular Metabolism
- (2016) Jens Nielsen et al. CELL
- Targeted genome editing in the rare actinomycete Actinoplanes sp. SE50/110 by using the CRISPR/Cas9 System
- (2016) Timo Wolf et al. JOURNAL OF BIOTECHNOLOGY
- CRISPR-Cas9 for the genome engineering of cyanobacteria and succinate production
- (2016) Hung Li et al. METABOLIC ENGINEERING
- CRISPR/Cas9 mediated targeted mutagenesis of the fast growing cyanobacterium Synechococcus elongatus UTEX 2973
- (2016) Kristen E. Wendt et al. Microbial Cell Factories
- Easy regulation of metabolic flux in Escherichia coli using an endogenous type I-E CRISPR-Cas system
- (2016) Yizhao Chang et al. Microbial Cell Factories
- Development of a fast and easy method for Escherichia coli genome editing with CRISPR/Cas9
- (2016) Dongdong Zhao et al. Microbial Cell Factories
- Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage
- (2016) Alexis C. Komor et al. NATURE
- Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering
- (2016) Andrew D Garst et al. NATURE BIOTECHNOLOGY
- Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells
- (2016) Yunqing Ma et al. NATURE METHODS
- Directed evolution using dCas9-targeted somatic hypermutation in mammalian cells
- (2016) Gaelen T Hess et al. NATURE METHODS
- Programmable control of bacterial gene expression with the combined CRISPR and antisense RNA system
- (2016) Young Je Lee et al. NUCLEIC ACIDS RESEARCH
- Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes inEscherichia coli
- (2016) Brady F. Cress et al. NUCLEIC ACIDS RESEARCH
- Consequences of Cas9 cleavage in the chromosome ofEscherichia coli
- (2016) Lun Cui et al. NUCLEIC ACIDS RESEARCH
- Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems
- (2016) K. Nishida et al. SCIENCE
- DNA Editing by APOBECs: A Genomic Preserver and Transformer
- (2016) Binyamin A. Knisbacher et al. TRENDS IN GENETICS
- Bacterial Genome Editing with CRISPR-Cas9: Deletion, Integration, Single Nucleotide Modification, and Desirable “Clean” Mutant Selection in Clostridium beijerinckii as an Example
- (2016) Yi Wang et al. ACS Synthetic Biology
- CRISPR/Cas9-Based Efficient Genome Editing in Clostridium ljungdahlii, an Autotrophic Gas-Fermenting Bacterium
- (2016) He Huang et al. ACS Synthetic Biology
- Corynebacterium glutamicum Metabolic Engineering with CRISPR Interference (CRISPRi)
- (2016) Sara Cleto et al. ACS Synthetic Biology
- Controlling Citrate Synthase Expression by CRISPR/Cas9 Genome Editing for n-Butanol Production in Escherichia coli
- (2016) Min-Ji Heo et al. ACS Synthetic Biology
- CRISPR-based genome editing and expression control systems inClostridium acetobutylicumandClostridium beijerinckii
- (2016) Qi Li et al. Biotechnology Journal
- EasyClone-MarkerFree: A vector toolkit for marker-less integration of genes intoSaccharomyces cerevisiaevia CRISPR-Cas9
- (2016) Mathew M Jessop-Fabre et al. Biotechnology Journal
- CRMAGE: CRISPR Optimized MAGE Recombineering
- (2016) Carlotta Ronda et al. Scientific Reports
- Multigene disruption in undomesticated Bacillus subtilis ATCC 6051a using the CRISPR/Cas9 system
- (2016) Kang Zhang et al. Scientific Reports
- A CRISPR-Cas9 Assisted Non-Homologous End-Joining Strategy for One-step Engineering of Bacterial Genome
- (2016) Tianyuan Su et al. Scientific Reports
- One-step high-efficiency CRISPR/Cas9-mediated genome editing in Streptomyces
- (2015) He Huang et al. ACTA BIOCHIMICA ET BIOPHYSICA SINICA
- Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase
- (2015) Tao Xu et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Coupling the CRISPR/Cas9 System with Lambda Red Recombineering Enables Simplified Chromosomal Gene Replacement in Escherichia coli
- (2015) Michael E. Pyne et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Multigene Editing in the Escherichia coli Genome via the CRISPR-Cas9 System
- (2015) Yu Jiang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
- (2015) Bernd Zetsche et al. CELL
- Metabolic engineering of Escherichia coli using CRISPR–Cas9 meditated genome editing
- (2015) Yifan Li et al. METABOLIC ENGINEERING
- Application of CRISPRi for prokaryotic metabolic engineering involving multiple genes, a case study: Controllable P(3HB- co -4HB) biosynthesis
- (2015) Li Lv et al. METABOLIC ENGINEERING
- Multi -omics and metabolic modelling pipelines: Challenges and tools for systems microbiology
- (2015) Marco Fondi et al. MICROBIOLOGICAL RESEARCH
- Engineered CRISPR-Cas9 nucleases with altered PAM specificities
- (2015) Benjamin P. Kleinstiver et al. NATURE
- Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex
- (2015) Silvana Konermann et al. NATURE
- Broadening the targeting range of Staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition
- (2015) Benjamin P Kleinstiver et al. NATURE BIOTECHNOLOGY
- An updated evolutionary classification of CRISPR–Cas systems
- (2015) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- CRISPR-Cas9 Based Engineering of Actinomycetal Genomes
- (2015) Yaojun Tong et al. ACS Synthetic Biology
- Multiple Gene Repression in Cyanobacteria Using CRISPRi
- (2015) Lun Yao et al. ACS Synthetic Biology
- Targeted Large-Scale Deletion of Bacterial Genomes Using CRISPR-Nickases
- (2015) Kylie Standage-Beier et al. ACS Synthetic Biology
- CRISPathBrick: Modular Combinatorial Assembly of Type II-A CRISPR Arrays for dCas9-Mediated Multiplex Transcriptional Repression in E. coli
- (2015) Brady F. Cress et al. ACS Synthetic Biology
- CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites
- (2014) Yuki Naito et al. BIOINFORMATICS
- M-path: a compass for navigating potential metabolic pathways
- (2014) Michihiro Araki et al. BIOINFORMATICS
- Development and Applications of CRISPR-Cas9 for Genome Engineering
- (2014) Patrick D. Hsu et al. CELL
- CRISPR–Cas9-assisted recombineering in Lactobacillus reuteri
- (2014) Jee-Hwan Oh et al. NUCLEIC ACIDS RESEARCH
- High-Efficiency Multiplex Genome Editing of Streptomyces Species Using an Engineered CRISPR/Cas System
- (2014) Ryan E. Cobb et al. ACS Synthetic Biology
- Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
- (2013) Lei S. Qi et al. CELL
- Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System
- (2013) Baohui Chen et al. CELL
- Mechanisms of Programmed DNA Lesions and Genomic Instability in the Immune System
- (2013) Frederick W. Alt et al. CELL
- RNA-guided editing of bacterial genomes using CRISPR-Cas systems
- (2013) Wenyan Jiang et al. NATURE BIOTECHNOLOGY
- Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
- (2013) David Bikard et al. NUCLEIC ACIDS RESEARCH
- RNA-Guided Human Genome Engineering via Cas9
- (2013) P. Mali et al. SCIENCE
- Multiplex Genome Engineering Using CRISPR/Cas Systems
- (2013) L. Cong et al. SCIENCE
- Bacillus subtilis genome editing using ssDNA with short homology regions
- (2012) Yang Wang et al. NUCLEIC ACIDS RESEARCH
- Metabolic Engineering of Bacteria
- (2011) Ravi R. Kumar et al. INDIAN JOURNAL OF MICROBIOLOGY
- Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides
- (2010) Joseph R Warner et al. NATURE BIOTECHNOLOGY
- Programming cells by multiplex genome engineering and accelerated evolution
- (2009) Harris H. Wang et al. NATURE
- Recombineering: a homologous recombination-based method of genetic engineering
- (2009) Shyam K Sharan et al. Nature Protocols
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