Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering
Authors
Keywords
-
Journal
NATURE BIOTECHNOLOGY
Volume 35, Issue 1, Pages 48-55
Publisher
Springer Nature
Online
2016-12-13
DOI
10.1038/nbt.3718
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria
- (2016) Jason M. Peters et al. CELL
- Multiplexed barcoded CRISPR-Cas9 screening enabled by CombiGEM
- (2016) Alan S. L. Wong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A highly precise and portable genome engineering method allows comparison of mutational effects across bacterial species
- (2016) Ákos Nyerges et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CRMAGE: CRISPR Optimized MAGE Recombineering
- (2016) Carlotta Ronda et al. Scientific Reports
- Multigene Editing in the Escherichia coli Genome via the CRISPR-Cas9 System
- (2015) Yu Jiang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Genome-wide CRISPR Screen in a Mouse Model of Tumor Growth and Metastasis
- (2015) Sidi Chen et al. CELL
- Metabolic engineering of Escherichia coli using CRISPR–Cas9 meditated genome editing
- (2015) Yifan Li et al. METABOLIC ENGINEERING
- Multiplexed tracking of combinatorial genomic mutations in engineered cell populations
- (2015) Ramsey I Zeitoun et al. NATURE BIOTECHNOLOGY
- Increasing the efficiency of precise genome editing with CRISPR-Cas9 by inhibition of nonhomologous end joining
- (2015) Takeshi Maruyama et al. NATURE BIOTECHNOLOGY
- Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons
- (2015) Kelly M. Wetmore et al. mBio
- The no-SCAR (Scarless Cas9 Assisted Recombineering) system for genome editing in Escherichia coli
- (2015) Chris R. Reisch et al. Scientific Reports
- Efficient Reassignment of a Frequent Serine Codon in Wild-Type Escherichia coli
- (2015) Joanne M. Ho et al. ACS Synthetic Biology
- Comparison of genome-wide selection strategies to identify furfural tolerance genes in Escherichia coli
- (2014) Tirzah Y. Glebes et al. BIOTECHNOLOGY AND BIOENGINEERING
- Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation
- (2014) Luke A. Gilbert et al. CELL
- Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria
- (2014) I. Farasat et al. Molecular Systems Biology
- High-throughput screening of a CRISPR/Cas9 library for functional genomics in human cells
- (2014) Yuexin Zhou et al. NATURE
- Saturation editing of genomic regions by multiplex homology-directed repair
- (2014) Gregory M. Findlay et al. NATURE
- Functional optimization of gene clusters by combinatorial design and assembly
- (2014) Michael J Smanski et al. NATURE BIOTECHNOLOGY
- A guide to genome engineering with programmable nucleases
- (2014) Hyongbum Kim et al. NATURE REVIEWS GENETICS
- CRISPR–Cas9-assisted recombineering in Lactobacillus reuteri
- (2014) Jee-Hwan Oh et al. NUCLEIC ACIDS RESEARCH
- Optimization of Genome Engineering Approaches with the CRISPR/Cas9 System
- (2014) Kai Li et al. PLoS One
- Evolution-guided optimization of biosynthetic pathways
- (2014) Srivatsan Raman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Codon Compression Algorithms for Saturation Mutagenesis
- (2014) Gur Pines et al. ACS Synthetic Biology
- Homology-Integrated CRISPR–Cas (HI-CRISPR) System for One-Step Multigene Disruption in Saccharomyces cerevisiae
- (2014) Zehua Bao et al. ACS Synthetic Biology
- Life after genetics
- (2014) Jay Shendure Genome Medicine
- Directed evolution of an E. coli inner membrane transporter for improved efflux of biofuel molecules
- (2013) Jee Foo et al. Biotechnology for Biofuels
- Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress
- (2013) Alejandra Rodríguez-Verdugo et al. BMC EVOLUTIONARY BIOLOGY
- Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
- (2013) Lei S. Qi et al. CELL
- X-ray Crystal Structures of the Escherichia coli RNA Polymerase in Complex with Benzoxazinorifamycins
- (2013) Vadim Molodtsov et al. JOURNAL OF MEDICINAL CHEMISTRY
- Structural basis for the inhibition of bacterial multidrug exporters
- (2013) Ryosuke Nakashima et al. NATURE
- Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library
- (2013) Hiroko Koike-Yusa et al. NATURE BIOTECHNOLOGY
- RNA-guided editing of bacterial genomes using CRISPR-Cas systems
- (2013) Wenyan Jiang et al. NATURE BIOTECHNOLOGY
- Divergent evolution of protein conformational dynamics in dihydrofolate reductase
- (2013) Gira Bhabha et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Engineering furfural tolerance in Escherichia coli improves the fermentation of lignocellulosic sugars into renewable chemicals
- (2013) X. Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomically Recoded Organisms Expand Biological Functions
- (2013) M. J. Lajoie et al. SCIENCE
- Structural Systems Biology Evaluation of Metabolic Thermotolerance in Escherichia coli
- (2013) R. L. Chang et al. SCIENCE
- RNA-Guided Human Genome Engineering via Cas9
- (2013) P. Mali et al. SCIENCE
- Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells
- (2013) Ophir Shalem et al. SCIENCE
- Genetic Screens in Human Cells Using the CRISPR-Cas9 System
- (2013) Tim Wang et al. SCIENCE
- Multiplex Genome Engineering Using CRISPR/Cas Systems
- (2013) L. Cong et al. SCIENCE
- Enhancing Tolerance to Short-Chain Alcohols by Engineering the Escherichia coli AcrB Efflux Pump to Secrete the Non-native Substrate n-Butanol
- (2013) Michael A. Fisher et al. ACS Synthetic Biology
- Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria
- (2012) Sarah M. Chiang et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
- Improving Lambda Red Genome Engineering in Escherichia coli via Rational Removal of Endogenous Nucleases
- (2012) Joshua A. Mosberg et al. PLoS One
- Enhancing E. coli Tolerance towards Oxidative Stress via Engineering Its Global Regulator cAMP Receptor Protein (CRP)
- (2012) Souvik Basak et al. PLoS One
- Strategy for directing combinatorial genome engineering in Escherichia coli
- (2012) N. R. Sandoval et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Molecular Diversity of Adaptive Convergence
- (2012) O. Tenaillon et al. SCIENCE
- A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity
- (2012) M. Jinek et al. SCIENCE
- Multiplexed in Vivo His-Tagging of Enzyme Pathways for in Vitro Single-Pot Multienzyme Catalysis
- (2012) Harris H. Wang et al. ACS Synthetic Biology
- ProDy: Protein Dynamics Inferred from Theory and Experiments
- (2011) A. Bakan et al. BIOINFORMATICS
- Probing Cellular Processes with Oligo-Mediated Recombination and Using the Knowledge Gained to Optimize Recombineering
- (2011) James A. Sawitzke et al. JOURNAL OF MOLECULAR BIOLOGY
- Evolutionary paths to antibiotic resistance under dynamically sustained drug selection
- (2011) Erdal Toprak et al. NATURE GENETICS
- Modified bases enable high-efficiency oligonucleotide-mediated allelic replacement via mismatch repair evasion
- (2011) H. H. Wang et al. NUCLEIC ACIDS RESEARCH
- Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement
- (2011) Farren J. Isaacs et al. SCIENCE
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Elucidating acetate tolerance in E. coli using a genome-wide approach
- (2010) Nicholas R. Sandoval et al. METABOLIC ENGINEERING
- Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips
- (2010) Sriram Kosuri et al. NATURE BIOTECHNOLOGY
- Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides
- (2010) Joseph R Warner et al. NATURE BIOTECHNOLOGY
- Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples
- (2010) A. M. Smith et al. NUCLEIC ACIDS RESEARCH
- Cellulosic hydrolysate toxicity and tolerance mechanisms in Escherichia coli
- (2009) Tirzah Y Mills et al. Biotechnology for Biofuels
- Role of reactive oxygen species in antibiotic action and resistance
- (2009) Daniel J Dwyer et al. CURRENT OPINION IN MICROBIOLOGY
- Programming cells by multiplex genome engineering and accelerated evolution
- (2009) Harris H. Wang et al. NATURE
- Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
- (2009) Tim van Opijnen et al. NATURE METHODS
- Compensatory Evolution of Gene Regulation in Response to Stress by Escherichia coli Lacking RpoS
- (2009) Daniel M. Stoebel et al. PLoS Genetics
- Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
- (2008) Micah Hamady et al. NATURE METHODS
- GLUE-IT and PEDEL-AA: new programmes for analyzing protein diversity in randomized libraries
- (2008) A. E. Firth et al. NUCLEIC ACIDS RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More