Gene transcription in bursting: a unified mode for realizing accuracy and stochasticity
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Gene transcription in bursting: a unified mode for realizing accuracy and stochasticity
Authors
Keywords
-
Journal
BIOLOGICAL REVIEWS
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2018-07-19
DOI
10.1111/brv.12452
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A stable mode of bookmarking by TBP recruits RNA polymerase II to mitotic chromosomes
- (2018) Sheila S Teves et al. eLife
- Imaging Transcriptional Regulation of Eukaryotic mRNA Genes: Advances and Outlook
- (2017) Jie Yao JOURNAL OF MOLECULAR BIOLOGY
- Stochastic switching in biology: from genotype to phenotype
- (2017) Paul C Bressloff Journal of Physics A-Mathematical and Theoretical
- What shapes eukaryotic transcriptional bursting?
- (2017) Damien Nicolas et al. Molecular BioSystems
- Dynamic chromatin technologies: from individual molecules to epigenomic regulation in cells
- (2017) Olivier Cuvier et al. NATURE REVIEWS GENETICS
- Symmetry breaking in development and stochastic gene expression
- (2017) Jonathan R. Chubb Wiley Interdisciplinary Reviews-Developmental Biology
- Transcription Dynamics in Living Cells
- (2016) Tineke L. Lenstra et al. Annual Review of Biophysics
- Single-Cell and Single-Molecule Analysis of Gene Expression Regulation
- (2016) Maria Vera et al. Annual Review of Genetics
- Enhancer Control of Transcriptional Bursting
- (2016) Takashi Fukaya et al. CELL
- Digital Quantification of Proteins and mRNA in Single Mammalian Cells
- (2016) Cem Albayrak et al. MOLECULAR CELL
- Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping
- (2016) Caroline R. Bartman et al. MOLECULAR CELL
- Kinetics of transcription initiation directed by multiplecis-regulatory elements on theglnAp2promoter
- (2016) Yaolai Wang et al. NUCLEIC ACIDS RESEARCH
- Stochastic Kinetics of Nascent RNA
- (2016) Heng Xu et al. PHYSICAL REVIEW LETTERS
- Measurement of gene regulation in individual cells reveals rapid switching between promoter states
- (2016) Leonardo A. Sepúlveda et al. SCIENCE
- A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting
- (2016) Katjana Tantale et al. Nature Communications
- On the way of revealing coactivator complexes cross-talk during transcriptional activation
- (2016) Aleksey N. Krasnov et al. Cell and Bioscience
- A continuum model of transcriptional bursting
- (2016) Adam M Corrigan et al. eLife
- Variation is function: Are single cell differences functionally important?
- (2015) Hannah Dueck et al. BIOESSAYS
- Control of Transcript Variability in Single Mammalian Cells
- (2015) Nico Battich et al. CELL
- Integrating single-molecule experiments and discrete stochastic models to understand heterogeneous gene transcription dynamics
- (2015) Brian Munsky et al. METHODS
- Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
- (2015) Florian Buettner et al. NATURE BIOTECHNOLOGY
- Quantification of nascent transcription by bromouridine immunocapture nuclear run-on RT-qPCR
- (2015) Thomas C Roberts et al. Nature Protocols
- Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation
- (2015) Björn Reinius et al. NATURE REVIEWS GENETICS
- Direct observation of the translocation mechanism of transcription termination factor Rho
- (2015) Veronika Gocheva et al. NUCLEIC ACIDS RESEARCH
- Single-molecule kinetics and footprinting of DNA bis-intercalation: the paradigmatic case of Thiocoraline
- (2015) Joan Camunas-Soler et al. NUCLEIC ACIDS RESEARCH
- Nuclear Retention of mRNA in Mammalian Tissues
- (2015) Keren Bahar Halpern et al. Cell Reports
- Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism
- (2015) Katja N. Rybakova et al. PLoS Computational Biology
- Deciphering Transcriptional Dynamics In Vivo by Counting Nascent RNA Molecules
- (2015) Sandeep Choubey et al. PLoS Computational Biology
- Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data
- (2015) Diana Stefan et al. PLoS Computational Biology
- From Structural Variation of Gene Molecules to Chromatin Dynamics and Transcriptional Bursting
- (2015) Hinrich Boeger et al. Genes
- Single cell visualization of transcription kinetics variance of highly mobile identical genes using 3D nanoimaging
- (2015) Paolo Annibale et al. Scientific Reports
- A New Twist on Transcriptional Bursting
- (2014) David Levens et al. CELL
- Mechanism of Transcriptional Bursting in Bacteria
- (2014) Shasha Chong et al. CELL
- Regulation of Transcriptional Bursting by a Naturally Oscillating Signal
- (2014) Adam M. Corrigan et al. CURRENT BIOLOGY
- Transcription factor heterogeneity in pluripotent stem cells: a stochastic advantage
- (2014) M.-E. Torres-Padilla et al. DEVELOPMENT
- Reconciling the concurrent fast and slow cycling of proteins on gene promoters
- (2014) Y. Wang et al. Journal of the Royal Society Interface
- DNase Footprint Signatures Are Dictated by Factor Dynamics and DNA Sequence
- (2014) Myong-Hee Sung et al. MOLECULAR CELL
- Transcription factors without footprints
- (2014) Nicole Rusk NATURE METHODS
- In the right place at the right time: visualizing and understanding mRNA localization
- (2014) Adina R. Buxbaum et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Tracing the molecular basis of transcriptional dynamics in noisy data by using an experiment-based mathematical model
- (2014) Katja N. Rybakova et al. NUCLEIC ACIDS RESEARCH
- Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos
- (2014) J. P. Bothma et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transcription Factors Modulate c-Fos Transcriptional Bursts
- (2014) Adrien Senecal et al. Cell Reports
- Inference of RNA Polymerase II Transcription Dynamics from Chromatin Immunoprecipitation Time Course Data
- (2014) Ciira wa Maina et al. PLoS Computational Biology
- Direct measurement of transcription rates reveals multiple mechanisms for configuration of the Arabidopsis ambient temperature response
- (2014) Kate Sidaway-Lee et al. GENOME BIOLOGY
- Stochastic models of transcription: From single molecules to single cells
- (2013) Alvaro Sanchez et al. METHODS
- Image-based transcriptomics in thousands of single human cells at single-molecule resolution
- (2013) Nico Battich et al. NATURE METHODS
- Single-molecule imaging of transcription factor binding to DNA in live mammalian cells
- (2013) J Christof M Gebhardt et al. NATURE METHODS
- Quantifying the transcriptional output of single alleles in single living mammalian cells
- (2013) Sharon Yunger et al. Nature Protocols
- Genome-wide measurement of protein-DNA binding dynamics using competition ChIP
- (2013) Colin R Lickwar et al. Nature Protocols
- Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization
- (2013) Samuel O Skinner et al. Nature Protocols
- Eukaryotic transcriptional dynamics: from single molecules to cell populations
- (2013) Antoine Coulon et al. NATURE REVIEWS GENETICS
- Stimulus-induced modulation of transcriptional bursting in a single mammalian gene
- (2013) N. Molina et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA polymerase approaches its promoter without long-range sliding along DNA
- (2013) L. J. Friedman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genetic Determinants and Cellular Constraints in Noisy Gene Expression
- (2013) A. Sanchez et al. SCIENCE
- Direct observation of frequency modulated transcription in single cells using light activation
- (2013) Daniel R Larson et al. eLife
- Temporal dynamics and transcriptional control using single-cell gene expression analysis
- (2013) Tsukasa Kouno et al. GENOME BIOLOGY
- CoSMoS Unravels Mysteries of Transcription Initiation
- (2012) Richard L. Gourse et al. CELL
- Mechanism of Transcription Initiation at an Activator-Dependent Promoter Defined by Single-Molecule Observation
- (2012) Larry J. Friedman et al. CELL
- Transcription goes digital
- (2012) Timothée Lionnet et al. EMBO REPORTS
- De novo derivation of proteomes from transcriptomes for transcript and protein identification
- (2012) Vanessa C Evans et al. NATURE METHODS
- Single-molecule analysis of gene expression using two-color RNA labeling in live yeast
- (2012) Sami Hocine et al. NATURE METHODS
- Transcriptional burst frequency and burst size are equally modulated across the human genome
- (2012) R. D. Dar et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Using Gene Expression Noise to Understand Gene Regulation
- (2012) B. Munsky et al. SCIENCE
- Dynamic Mechanism for the Transcription Apparatus Orchestrating Reliable Responses to Activators
- (2012) Yaolai Wang et al. Scientific Reports
- General properties of transcriptional time series in Escherichia coli
- (2011) Lok-hang So et al. NATURE GENETICS
- Mammalian Genes Are Transcribed with Widely Different Bursting Kinetics
- (2011) D. M. Suter et al. SCIENCE
- Demystifying DNA Demethylation
- (2011) C. S. Nabel et al. SCIENCE
- Bursts and pulses: insights from single cell studies into transcriptional mechanisms
- (2010) Jonathan R Chubb et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Functional roles for noise in genetic circuits
- (2010) Avigdor Eldar et al. NATURE
- Inducible gene expression: diverse regulatory mechanisms
- (2010) Vikki M. Weake et al. NATURE REVIEWS GENETICS
- Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells
- (2010) Y. Taniguchi et al. SCIENCE
- HIV Promoter Integration Site Primarily Modulates Transcriptional Burst Size Rather Than Frequency
- (2010) Ron Skupsky et al. PLoS Computational Biology
- Transcription Dynamics
- (2009) Gordon L. Hager et al. MOLECULAR CELL
- Defining mechanisms that regulate RNA polymerase II transcription in vivo
- (2009) Nicholas J. Fuda et al. NATURE
- Ultradian hormone stimulation induces glucocorticoid receptor-mediated pulses of gene transcription
- (2009) Diana A. Stavreva et al. NATURE CELL BIOLOGY
- Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
- (2008) Arjun Raj et al. CELL
- Transcriptional bursts: A unified model of machines and mechanisms
- (2008) Tripti Tripathi et al. EPL
- Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression
- (2008) J. M. Pedraza et al. SCIENCE
- Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter
- (2008) T. S. Karpova et al. SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started