From Structural Variation of Gene Molecules to Chromatin Dynamics and Transcriptional Bursting

Tuning noise in gene expression

(2015) S. Tyagi   Molecular Systems Biology

Orthogonal control of expression mean and variance by epigenetic features at different genomic loci

(2015) S. S. Dey et al.   Molecular Systems Biology

Dynamic regulation of transcription factors by nucleosome remodeling

(2015) Ming Li et al.   eLife

A framework for modelling gene regulation which accommodates non-equilibrium mechanisms

(2014) Tobias Ahsendorf et al.   BMC BIOLOGY

Role of DNA sequence in chromatin remodeling and the formation of nucleosome-free regions

(2014) Yahli Lorch et al.   GENES & DEVELOPMENT

Nucleosomes, transcription, and probability

(2014) Hinrich Boeger   MOLECULAR BIOLOGY OF THE CELL

Modularity and predictability in cell signaling and decision making

(2014) Oguzhan Atay et al.   MOLECULAR BIOLOGY OF THE CELL

Nucleosomal promoter variation generates gene expression noise

(2014) Christopher R. Brown et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell nucleosome mapping reveals the molecular basis of gene expression heterogeneity

(2014) E. C. Small et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos

(2014) J. P. Bothma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Laplacian Dynamics on General Graphs

(2013) Inomzhon Mirzaev et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Eukaryotic transcriptional dynamics: from single molecules to cell populations

(2013) Antoine Coulon et al.   NATURE REVIEWS GENETICS

Genetic Determinants and Cellular Constraints in Noisy Gene Expression

(2013) A. Sanchez et al.   SCIENCE

Nucleosome Remodeling and Epigenetics

(2013) P. B. Becker et al.   Cold Spring Harbor Perspectives in Biology

Linking Stochastic Fluctuations in Chromatin Structure and Gene Expression

(2013) Christopher R. Brown et al.   PLOS BIOLOGY

Direct observation of frequency modulated transcription in single cells using light activation

(2013) Daniel R Larson et al.   eLife

Noise-mean relationship in mutated promoters

(2012) G. Hornung et al.   GENOME RESEARCH

Expression Noise and Acetylation Profiles Distinguish HDAC Functions

(2012) Leehee Weinberger et al.   MOLECULAR CELL

Dynamics of protein noise can distinguish between alternate sources of gene-expression variability

(2012) Abhyudai Singh et al.   Molecular Systems Biology

A map of nucleosome positions in yeast at base-pair resolution

(2012) Kristin Brogaard et al.   NATURE

Genome-wide protein–DNA binding dynamics suggest a molecular clutch for transcription factor function

(2012) Colin R. Lickwar et al.   NATURE

A Linear Framework for Time-Scale Separation in Nonlinear Biochemical Systems

(2012) Jeremy Gunawardena   PLoS One

Identifying sources of variation and the flow of information in biochemical networks

(2012) C. G. Bowsher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional burst frequency and burst size are equally modulated across the human genome

(2012) R. D. Dar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In VivoRole for the Chromatin-remodeling Enzyme SWI/SNF in the Removal of Promoter Nucleosomes by Disassembly Rather Than Sliding

(2011) Christopher R. Brown et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Occlusion of Regulatory Sequences by Promoter Nucleosomes In Vivo

(2011) Changhui Mao et al.   PLoS One

Mammalian Genes Are Transcribed with Widely Different Bursting Kinetics

(2011) D. M. Suter et al.   SCIENCE

Real-Time Observation of Transcription Initiation and Elongation on an Endogenous Yeast Gene

(2011) D. R. Larson et al.   SCIENCE

Dynamic Analysis of Stochastic Transcription Cycles

(2011) Claire V. Harper et al.   PLOS BIOLOGY

Quantitative analysis of the transcription control mechanism

(2010) Changhui Mao et al.   Molecular Systems Biology

The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes

(2009) Lisa R. Racki et al.   NATURE

Nucleosome Retention and the Stochastic Nature of Promoter Chromatin Remodeling for Transcription

(2008) Hinrich Boeger et al.   CELL

Structure of a RSC–nucleosome complex and insights into chromatin remodeling

(2008) Yuriy Chaban et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY