Eukaryotic transcriptional dynamics: from single molecules to cell populations
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Title
Eukaryotic transcriptional dynamics: from single molecules to cell populations
Authors
Keywords
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Journal
NATURE REVIEWS GENETICS
Volume 14, Issue 8, Pages 572-584
Publisher
Springer Nature
Online
2013-07-09
DOI
10.1038/nrg3484
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Note: Only part of the references are listed.- Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts
- (2013) José Viñuelas et al. BMC BIOLOGY
- Intra-nuclear mobility and target search mechanisms of transcription factors: A single-molecule perspective on gene expression
- (2012) Davide Normanno et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Transcription Stochasticity of Complex Gene Regulation Models
- (2012) Anne Schwabe et al. BIOPHYSICAL JOURNAL
- Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts
- (2012) M. Frenkel-Morgenstern et al. GENOME RESEARCH
- Genome-wide protein–DNA binding dynamics suggest a molecular clutch for transcription factor function
- (2012) Colin R. Lickwar et al. NATURE
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Decision Making in Living Cells: Lessons from a Simple System
- (2011) Ido Golding Annual Review of Biophysics
- Chromosomal Position Effects Are Linked to Sir2-Mediated Variation in Transcriptional Burst Size
- (2011) Cory Batenchuk et al. BIOPHYSICAL JOURNAL
- Dynamic Exchange at Regulatory Elements during Chromatin Remodeling Underlies Assisted Loading Mechanism
- (2011) Ty C. Voss et al. CELL
- Modeling the Cell Cycle: Why Do Certain Circuits Oscillate?
- (2011) James E. Ferrell et al. CELL
- Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution
- (2011) Ho Sung Rhee et al. CELL
- What do expression dynamics tell us about the mechanism of transcription?
- (2011) Daniel R Larson CURRENT OPINION IN GENETICS & DEVELOPMENT
- Real-time imaging of cotranscriptional splicing reveals a kinetic model that reduces noise: implications for alternative splicing regulation
- (2011) Ute Schmidt et al. JOURNAL OF CELL BIOLOGY
- The road less traveled: New views of steroid receptor action from the path of dose–response curves
- (2011) S. Stoney Simons et al. MOLECULAR AND CELLULAR ENDOCRINOLOGY
- Cellular reprogramming by the conjoint action of ER , FOXA1, and GATA3 to a ligand-inducible growth state
- (2011) S. L. Kong et al. Molecular Systems Biology
- Determinants of nucleosome organization in primary human cells
- (2011) Anton Valouev et al. NATURE
- Global quantification of mammalian gene expression control
- (2011) Björn Schwanhäusser et al. NATURE
- General properties of transcriptional time series in Escherichia coli
- (2011) Lok-hang So et al. NATURE GENETICS
- A transgenic mouse for in vivo detection of endogenous labeled mRNA
- (2011) Timothée Lionnet et al. NATURE METHODS
- Mammalian Genes Are Transcribed with Widely Different Bursting Kinetics
- (2011) D. M. Suter et al. SCIENCE
- Real-Time Observation of Transcription Initiation and Elongation on an Endogenous Yeast Gene
- (2011) D. R. Larson et al. SCIENCE
- A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome
- (2011) Z. Zhang et al. SCIENCE
- Dynamic Analysis of Stochastic Transcription Cycles
- (2011) Claire V. Harper et al. PLOS BIOLOGY
- Transcriptional Regulation: Effects of Promoter Proximal Pausing on Speed, Synchrony and Reliability
- (2011) Alistair N. Boettiger et al. PLoS Computational Biology
- Transcriptional Bursting from the HIV-1 Promoter Is a Significant Source of Stochastic Noise in HIV-1 Gene Expression
- (2010) Abhyudai Singh et al. BIOPHYSICAL JOURNAL
- Cross-Validating FRAP and FCS to Quantify the Impact of Photobleaching on In Vivo Binding Estimates
- (2010) Timothy J. Stasevich et al. BIOPHYSICAL JOURNAL
- On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter
- (2010) Antoine Coulon et al. BMC Systems Biology
- Nuclear proteins: finding and binding target sites in chromatin
- (2010) Martin E. van Royen et al. CHROMOSOME RESEARCH
- Methylation of H3K4 Is Required for Inheritance of Active Transcriptional States
- (2010) Tetsuya Muramoto et al. CURRENT BIOLOGY
- FRAP and kinetic modeling in the analysis of nuclear protein dynamics: what do we really know?
- (2010) Florian Mueller et al. CURRENT OPINION IN CELL BIOLOGY
- Oscillatory control of signalling molecules
- (2010) Pawel Paszek et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Digital nature of the immediate-early transcriptional response
- (2010) M. Stevense et al. DEVELOPMENT
- Highly Compacted Chromatin Formed In Vitro Reflects the Dynamics of Transcription Activation In Vivo
- (2010) Guohong Li et al. MOLECULAR CELL
- In vivo imaging of labelled endogenous β-actin mRNA during nucleocytoplasmic transport
- (2010) David Grünwald et al. NATURE
- Variability in gene expression underlies incomplete penetrance
- (2010) Arjun Raj et al. NATURE
- FOXA1 is a key determinant of estrogen receptor function and endocrine response
- (2010) Antoni Hurtado et al. NATURE GENETICS
- Single-allele analysis of transcription kinetics in living mammalian cells
- (2010) Sharon Yunger et al. NATURE METHODS
- Inducible gene expression: diverse regulatory mechanisms
- (2010) Vikki M. Weake et al. NATURE REVIEWS GENETICS
- Transcription of functionally related constitutive genes is not coordinated
- (2010) Saumil J Gandhi et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites
- (2010) F. Erdel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Population robustness arising from cellular heterogeneity
- (2010) P. Paszek et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A theoretical framework for gene induction and experimental comparisons
- (2010) K. M. Ong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Kinetics of Nucleosome Turnover Determined by Metabolic Labeling of Histones
- (2010) R. B. Deal et al. SCIENCE
- Live cell imaging and systems biology
- (2010) Myong-Hee Sung et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- HIV Promoter Integration Site Primarily Modulates Transcriptional Burst Size Rather Than Frequency
- (2010) Ron Skupsky et al. PLoS Computational Biology
- The Biology of Chromatin Remodeling Complexes
- (2009) Cedric R. Clapier et al. Annual Review of Biochemistry
- Imaging Transcription in Living Cells
- (2009) Xavier Darzacq et al. Annual Review of Biophysics
- The basal initiation machinery: beyond the general transcription factors
- (2009) Timothy W. Sikorski et al. CURRENT OPINION IN CELL BIOLOGY
- ChIP-Seq of ERα and RNA polymerase II defines genes differentially responding to ligands
- (2009) Willem-Jan Welboren et al. EMBO JOURNAL
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- (2009) Sam John et al. ENDOCRINOLOGY
- Incorporating nucleosomes into thermodynamic models of transcription regulation
- (2009) T. Raveh-Sadka et al. GENOME RESEARCH
- High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
- (2009) A. Weiner et al. GENOME RESEARCH
- Combinatorial probabilistic chromatin interactions produce transcriptional heterogeneity
- (2009) T. C. Voss et al. JOURNAL OF CELL SCIENCE
- Chromatin Remodelers Act Globally, Sequence Positions Nucleosomes Locally
- (2009) Peretz D. Partensky et al. JOURNAL OF MOLECULAR BIOLOGY
- Transcription Dynamics
- (2009) Gordon L. Hager et al. MOLECULAR CELL
- Intersubunit coordination in a homomeric ring ATPase
- (2009) Jeffrey R. Moffitt et al. NATURE
- The logic of chromatin architecture and remodelling at promoters
- (2009) Bradley R. Cairns NATURE
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- (2009) Nicholas J. Fuda et al. NATURE
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- (2009) Eran Segal et al. NATURE REVIEWS GENETICS
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- (2009) Cizhong Jiang et al. NATURE REVIEWS GENETICS
- Rates of in situ transcription and splicing in large human genes
- (2009) Jarnail Singh et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Thermodynamics of Intragenic Nucleosome Ordering
- (2009) G. Chevereau et al. PHYSICAL REVIEW LETTERS
- Elongation dynamics shape bursty transcription and translation
- (2009) Maciej Dobrzyński et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A single molecule view of gene expression
- (2009) Daniel R. Larson et al. TRENDS IN CELL BIOLOGY
- Precise Regulation of Gene Expression Dynamics Favors Complex Promoter Architectures
- (2009) Dirk Müller et al. PLoS Computational Biology
- FoxA1 Translates Epigenetic Signatures into Enhancer-Driven Lineage-Specific Transcription
- (2008) Mathieu Lupien et al. CELL
- Nucleosome Retention and the Stochastic Nature of Promoter Chromatin Remodeling for Transcription
- (2008) Hinrich Boeger et al. CELL
- Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
- (2008) Arjun Raj et al. CELL
- Marking time: The dynamic role of chromatin and covalent modification in transcription
- (2008) George Reid et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Chromatin Remodeling Complexes Interact Dynamically with a Glucocorticoid Receptor–regulated Promoter
- (2008) Thomas A. Johnson et al. MOLECULAR BIOLOGY OF THE CELL
- Modulation of RNA Polymerase Assembly Dynamics in Transcriptional Regulation
- (2008) Stanislaw A. Gorski et al. MOLECULAR CELL
- Mediator-Dependent Recruitment of TFIIH Modules in Preinitiation Complex
- (2008) Cyril Esnault et al. MOLECULAR CELL
- Cyclical DNA methylation of a transcriptionally active promoter
- (2008) Raphaël Métivier et al. NATURE
- Chromatin decouples promoter threshold from dynamic range
- (2008) Felix H. Lam et al. NATURE
- The DNA-encoded nucleosome organization of a eukaryotic genome
- (2008) Noam Kaplan et al. NATURE
- Regulatory activity revealed by dynamic correlations in gene expression noise
- (2008) Mary J Dunlop et al. NATURE GENETICS
- A quantitative model of transcription factor–activated gene expression
- (2008) Harold D Kim et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Single-RNA counting reveals alternative modes of gene expression in yeast
- (2008) Daniel Zenklusen et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Transcriptional control of noise in gene expression
- (2008) Álvaro Sánchez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regulation of TATA-binding protein dynamics in living yeast cells
- (2008) R. O. Sprouse et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression
- (2008) J. M. Pedraza et al. SCIENCE
- Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter
- (2008) T. S. Karpova et al. SCIENCE
- Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
- (2008) Yair Field et al. PLoS Computational Biology
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