Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated withPiloderma-Pinussymbiosis: improved methodologies for assessing gene expressionin situ

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ectomycorrhizal fungal traits reflect environmental conditions along a coastal California edaphic gradient

(2013) Holly V. Moeller et al.   FEMS MICROBIOLOGY ECOLOGY

Community genetics in the time of next-generation molecular technologies

(2013) Felix Gugerli et al.   MOLECULAR ECOLOGY

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

Using Hierarchical Clustering of Secreted Protein Families to Classify and Rank Candidate Effectors of Rust Fungi

(2012) Diane G. O. Saunders et al.   PLoS One

Indifferent, Affectionate, or Deceitful: Lifestyles and Secretomes of Fungi

(2012) Rohan G. T. Lowe et al.   PLoS Pathogens

Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes

(2011) Kuan-Liang Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

(2011) Neil R. Gottel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development

(2011) Jonathan M. Plett et al.   CURRENT BIOLOGY

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Genome Portal of the Department of Energy Joint Genome Institute

(2011) I. V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Gene expression profiling in the stem of young maritime pine trees: detection of ammonium stress-responsive genes in the apex

(2011) Javier Canales et al.   TREES-STRUCTURE AND FUNCTION

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

(2010) Francis Martin et al.   NATURE

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

The Biochemistry and Structural Biology of Plant Cell Wall Deconstruction

(2010) H. J. Gilbert   PLANT PHYSIOLOGY

Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis

(2010) Paola Bonfante et al.   Nature Communications

Fungal Effector Proteins

(2009) Ioannis Stergiopoulos et al.   Annual Review of Phytopathology

Interaction Transcriptome Analysis Identifies Magnaporthe oryzae BAS1-4 as Biotrophy-Associated Secreted Proteins in Rice Blast Disease

(2009) G. Mosquera et al.   PLANT CELL

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The invasive plantAlliaria petiolata(garlic mustard) inhibits ectomycorrhizal fungi in its introduced range

(2008) Benjamin E. Wolfe et al.   JOURNAL OF ECOLOGY

Mastering ectomycorrhizal symbiosis: the impact of carbohydrates

(2008) U. Nehls   JOURNAL OF EXPERIMENTAL BOTANY

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

(2008) F. Martin et al.   NATURE