A de novo Assembly of the Common Frog (Rana temporaria) Transcriptome and Comparison of Transcription Following Exposure to Ranavirus and Batrachochytrium dendrobatidis
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A de novo Assembly of the Common Frog (Rana temporaria) Transcriptome and Comparison of Transcription Following Exposure to Ranavirus and Batrachochytrium dendrobatidis
Authors
Keywords
Immune response, Metabolic processes, Amphibians, Guanosine triphosphatase, Frogs, Virus effects on host gene expression, Fungal pathogens, Inflammation
Journal
PLoS One
Volume 10, Issue 6, Pages e0130500
Publisher
Public Library of Science (PLoS)
Online
2015-06-26
DOI
10.1371/journal.pone.0130500
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Collapse of Amphibian Communities Due to an Introduced Ranavirus
- (2014) Stephen J. Price et al. CURRENT BIOLOGY
- Conservation and divergence in the frog immunome: pyrosequencing and de novo assembly of immune tissue transcriptomes
- (2014) Anna E. Savage et al. GENE
- More than Skin Deep: Functional Genomic Basis for Resistance to Amphibian Chytridiomycosis
- (2014) Amy R. Ellison et al. Genome Biology and Evolution
- Assessing Risk and Guidance on Monitoring ofBatrachochytrium dendrobatidisin Europe through Identification of Taxonomic Selectivity of Infection
- (2013) VOJTECH BALÁŽ et al. CONSERVATION BIOLOGY
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- The Invasive Chytrid Fungus of Amphibians Paralyzes Lymphocyte Responses
- (2013) J. S. Fites et al. SCIENCE
- IFN-Inducible GTPases in Host Cell Defense
- (2012) Bae-Hoon Kim et al. Cell Host & Microbe
- Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species
- (2012) ERICA BREE ROSENBLUM et al. MOLECULAR ECOLOGY
- Immune Evasion Strategies of Ranaviruses and Innate Immune Responses to These Emerging Pathogens
- (2012) Leon Grayfer et al. Viruses-Basel
- The endosome–lysosome pathway and information generation in the immune system
- (2011) Colin Watts BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Cytokine release from innate immune cells: association with diverse membrane trafficking pathways
- (2011) P. Lacy et al. BLOOD
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
- (2011) S. Powell et al. NUCLEIC ACIDS RESEARCH
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage
- (2011) R. A. Farrer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MHC genotypes associate with resistance to a frog-killing fungus
- (2011) A. E. Savage et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Antiviral Immunity in Amphibians
- (2011) Guangchun Chen et al. Viruses-Basel
- Ecopathology of Ranaviruses Infecting Amphibians
- (2011) Debra Miller et al. Viruses-Basel
- Assessing the long-term impact of Ranavirus infection in wild common frog populations
- (2010) A. G. F. Teacher et al. ANIMAL CONSERVATION
- Antiviral protection following immunization correlates with humoral but not cell-mediated immunity
- (2010) Vijay Panchanathan et al. IMMUNOLOGY AND CELL BIOLOGY
- Innate Immune Responses and Permissiveness to Ranavirus Infection of Peritoneal Leukocytes in the Frog Xenopus laevis
- (2010) H. D. Morales et al. JOURNAL OF VIROLOGY
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Chytridiomycosis, Amphibian Extinctions, and Lessons for the Prevention of Future Panzootics
- (2009) Kerry M. Kriger et al. EcoHealth
- Evidence for Multiple Recent Host Species Shifts among the Ranaviruses (Family Iridoviridae)
- (2009) J. K. Jancovich et al. JOURNAL OF VIROLOGY
- Evidence for Directional Selection at a Novel Major Histocompatibility Class I Marker in Wild Common Frogs (Rana temporaria) Exposed to a Viral Pathogen (Ranavirus)
- (2009) Amber G. F. Teacher et al. PLoS One
- Expression Profiling the Temperature-Dependent Amphibian Response to Infection by Batrachochytrium dendrobatidis
- (2009) Laia Ribas et al. PLoS One
- Pathogenesis of Chytridiomycosis, a Cause of Catastrophic Amphibian Declines
- (2009) J. Voyles et al. SCIENCE
- Transcriptional response of Mexican axolotls to Ambystoma tigrinum virus (ATV) infection
- (2008) Jennifer D Cotter et al. BMC GENOMICS
- Experimental Evidence that Amphibian Ranaviruses Are Multi-Host Pathogens
- (2008) Danna M. Schock et al. COPEIA
- Assessing the gene space in draft genomes
- (2008) Genis Parra et al. NUCLEIC ACIDS RESEARCH
- Are we in the midst of the sixth mass extinction? A view from the world of amphibians
- (2008) D. B. Wake et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation