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Title
Dual RNA-seq of pathogen and host
Authors
Keywords
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Journal
NATURE REVIEWS MICROBIOLOGY
Volume 10, Issue 9, Pages 618-630
Publisher
Springer Nature
Online
2012-08-14
DOI
10.1038/nrmicro2852
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- (2012) M. B. Clark et al. GENOME RESEARCH
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- (2012) Lanay Tierney et al. Frontiers in Microbiology
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- Traces of post-transcriptional RNA modifications in deep sequencing data
- (2011) Sven Findeiß et al. BIOLOGICAL CHEMISTRY
- Microarrays, deep sequencing and the true measure of the transcriptome
- (2011) John H Malone et al. BMC BIOLOGY
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- (2011) Lauren M McIntyre et al. BMC GENOMICS
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- (2011) Anjali Mandlik et al. Cell Host & Microbe
- Biology and applications of small nucleolar RNAs
- (2011) Tomaž Bratkovič et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Progress in prokaryotic transcriptomics
- (2011) Melanie J Filiatrault CURRENT OPINION IN MICROBIOLOGY
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- (2011) Leon N Schulte et al. EMBO JOURNAL
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- (2011) S. Islam et al. GENOME RESEARCH
- RNA-sequence analysis of human B-cells
- (2011) J. M. Toung et al. GENOME RESEARCH
- Transcript amplification from single bacterium for transcriptome analysis
- (2011) Y. Kang et al. GENOME RESEARCH
- Synthetic spike-in standards for RNA-seq experiments
- (2011) L. Jiang et al. GENOME RESEARCH
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- (2011) Jun Zhang et al. Journal of Genetics and Genomics
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- SuperSAGE: A Modern Platform for Genome-Wide Quantitative Transcript Profiling
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- RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
- (2008) J. C. Marioni et al. GENOME RESEARCH
- Alternative isoform regulation in human tissue transcriptomes
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- (2008) Qun Pan et al. NATURE GENETICS
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- (2008) Nicole Cloonan et al. NATURE METHODS
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- RNA-Seq: a revolutionary tool for transcriptomics
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- A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
- (2008) M. Sultan et al. SCIENCE
- Investigating fixative-induced changes in RNA quality and utility by microarray analysis
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