Cross-kingdom synthetic microbiota supports tomato suppression of Fusarium wilt disease

Disentangling the genetic basis of rhizosphere microbiome assembly in tomato

(2022) Ben O. Oyserman et al.   Nature Communications

High-throughput cultivation and identification of bacteria from the plant root microbiota

(2021) Jingying Zhang et al.   Nature Protocols

Biocontrol Potential of Bacillus amyloliquefaciens against Botrytis pelargonii and Alternaria alternata on Capsicum annuum

(2021) Elham Ahmed Kazerooni et al.   Journal of Fungi

Bacillus velezensis stimulates resident rhizosphere Pseudomonas stutzeri for plant health through metabolic interactions

(2021) Xinli Sun et al.   ISME Journal

Tryptophan metabolism and bacterial commensals prevent fungal dysbiosis in Arabidopsis roots

(2021) Katarzyna W. Wolinska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How mycorrhizal associations drive plant population and community biology

(2020) Leho Tedersoo et al.   SCIENCE

Rhizosphere microbiome functional diversity and pathogen invasion resistance build up during plant development

(2020) Jie Hu et al.   ENVIRONMENTAL MICROBIOLOGY

A plant genetic network for preventing dysbiosis in the phyllosphere

(2020) Tao Chen et al.   NATURE

Competition for iron drives phytopathogen control by natural rhizosphere microbiomes

(2020) Shaohua Gu et al.   Nature Microbiology

The Plant Microbiome: From Ecology to Reductionism and Beyond

(2020) Connor R. Fitzpatrick et al.   Annual Review of Microbiology

Predicting disease occurrence with high accuracy based on soil macroecological patterns of Fusarium wilt

(2020) Jun Yuan et al.   ISME Journal

Changes in Bacterial and Fungal Microbiomes Associated with Tomatoes of Healthy and Infected by Fusarium oxysporum f. sp. lycopersici

(2020) Xin Zhou et al.   MICROBIAL ECOLOGY

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Disruption of Firmicutes and Actinobacteria abundance in tomato rhizosphere causes the incidence of bacterial wilt disease

(2020) Sang-Moo Lee et al.   ISME Journal

Plant Immune Mechanisms: From Reductionistic to Holistic Points of View

(2020) Jie Zhang et al.   Molecular Plant

A single bacterial genus maintains root growth in a complex microbiome

(2020) Omri M. Finkel et al.   NATURE

Innovations to culturing the uncultured microbial majority

(2020) William H. Lewis et al.   NATURE REVIEWS MICROBIOLOGY

Enrichment of beneficial cucumber rhizosphere microbes mediated by organic acid secretion

(2020) Tao Wen et al.   Horticulture Research

Evidence for the plant recruitment of beneficial microbes to suppress soil‐borne pathogens

(2020) Hongwei Liu et al.   NEW PHYTOLOGIST

High proportions of bacteria are culturable across major biomes

(2019) Adam C. Martiny   ISME Journal

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

(2019) Jingying Zhang et al.   NATURE BIOTECHNOLOGY

Fusarium oxysporum f. sp. lycopersici causal agent of vascular wilt disease of tomato: Biology to diversity– A review

(2019) C. Srinivas et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

(2019) Víctor J. Carrión et al.   SCIENCE

A Return to the Wild: Root Exudates and Food Security

(2019) Catherine Preece et al.   TRENDS IN PLANT SCIENCE

Variation among European beetle taxa in patterns of distance decay of similarity suggests a major role of dispersal processes

(2018) Carola Gómez-Rodríguez et al.   ECOGRAPHY

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Culturing the human microbiota and culturomics

(2018) Jean-Christophe Lagier et al.   NATURE REVIEWS MICROBIOLOGY

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

‘NetShift’: a methodology for understanding ‘driver microbes’ from healthy and disease microbiome datasets

(2018) Bhusan K. Kuntal et al.   ISME Journal

Rhizosphere microbiome structure alters to enable wilt resistance in tomato

(2018) Min-Jung Kwak et al.   NATURE BIOTECHNOLOGY

Mycobiome diversity: high-throughput sequencing and identification of fungi

(2018) R. Henrik Nilsson et al.   NATURE REVIEWS MICROBIOLOGY

Different mechanisms of Trichoderma virens -mediated resistance in tomato against Fusarium wilt involve the jasmonic and salicylic acid pathways

(2017) Sudisha Jogaiah et al.   MOLECULAR PLANT PATHOLOGY

Root microbiota drive direct integration of phosphate stress and immunity

(2017) Gabriel Castrillo et al.   NATURE

Epigenetic regulation of antagonistic receptors confers rice blast resistance with yield balance

(2017) Yiwen Deng et al.   SCIENCE

Current Insights into the Role of Rhizosphere Bacteria in Disease Suppressive Soils

(2017) Ruth Gómez Expósito et al.   Frontiers in Microbiology

Rhizosphere Microbiome Recruited from a Suppressive Compost Improves Plant Fitness and Increases Protection against Vascular Wilt Pathogens of Tomato

(2017) Anastasis Antoniou et al.   Frontiers in Plant Science

Genomic profiling of exogenous abscisic acid-responsive microRNAs in tomato (Solanum lycopersicum)

(2016) Hai-Yang Cheng et al.   BMC GENOMICS

Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent

(2016) Kei Hiruma et al.   CELL

Shifting from priming of salicylic acid- to jasmonic acid-regulated defences by Trichoderma protects tomato against the root knot nematode Meloidogyne incognita

(2016) Ainhoa Martínez-Medina et al.   NEW PHYTOLOGIST

Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management

(2016) R. Poudel et al.   PHYTOPATHOLOGY

The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria

(2016) Max-Bernhard Ballhausen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Probiotic Diversity Enhances Rhizosphere Microbiome Function and Plant Disease Suppression

(2016) Jie Hu et al.   mBio

Microbial and biochemical basis of a Fusarium wilt-suppressive soil

(2015) Jae-Yul Cha et al.   ISME Journal

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping

(2015) Rakesh Santhanam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances

(2013) Rachel I Adams et al.   ISME Journal

A new PGPR co-inoculated with Bradyrhizobium japonicum enhances soybean nodulation

(2013) Oscar Masciarelli et al.   MICROBIOLOGICAL RESEARCH

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Disease resistance or growth: the role of plant hormones in balancing immune responses and fitness costs

(2013) Nicolas Denancé et al.   Frontiers in Plant Science

Identification and role of organic acids in watermelon root exudates for recruiting Paenibacillus polymyxa SQR-21 in the rhizosphere

(2011) Ning Ling et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Real-time PCR for differential determination of the tomato wilt fungus, Fusarium oxysporum f. sp. lycopersici, and its races

(2010) Keigo Inami et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

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