Soil bacterial networks are less stable under drought than fungal networks

Species co-occurrence networks: Can they reveal trophic and non-trophic interactions in ecological communities?

(2018) Mara A. Freilich et al.   ECOLOGY

Below-ground connections underlying above-ground food production: a framework for optimising ecological connections in the rhizosphere

(2017) Franciska T. de Vries et al.   JOURNAL OF ECOLOGY

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

(2017) Sigrid Dassen et al.   MOLECULAR ECOLOGY

Legacy effects of drought on plant-soil feedbacks and plant-plant interactions

(2017) Aurore Kaisermann et al.   NEW PHYTOLOGIST

Linking NO and N 2 O emission pulses with the mobilization of mineral and organic N upon rewetting dry soils

(2017) Sonja Leitner et al.   SOIL BIOLOGY & BIOCHEMISTRY

Links between soil microbial communities and plant traits in a species-rich grassland under long-term climate change

(2017) Emma J. Sayer et al.   Ecology and Evolution

The multilayer nature of ecological networks

(2017) Shai Pilosof et al.   Nature Ecology & Evolution

Dispersal governs the reorganization of ecological networks under environmental change

(2017) Patrick L. Thompson et al.   Nature Ecology & Evolution

Altered precipitation seasonality impacts the dominant fungal but rare bacterial taxa in subtropical forest soils

(2016) Qian Zhao et al.   BIOLOGY AND FERTILITY OF SOILS

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Yield of temperate forage grassland species is either largely resistant or resilient to experimental summer drought

(2016) Daniel Hofer et al.   JOURNAL OF APPLIED ECOLOGY

Plant community controls on short-term ecosystem nitrogen retention

(2016) Franciska T. de Vries et al.   NEW PHYTOLOGIST

The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria

(2016) Max-Bernhard Ballhausen et al.   SOIL BIOLOGY & BIOCHEMISTRY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Genome reduction in an abundant and ubiquitous soil bacterium ‘Candidatus Udaeobacter copiosus’

(2016) Tess E. Brewer et al.   Nature Microbiology

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Food-web stability signals critical transitions in temperate shallow lakes

(2015) Jan J. Kuiper et al.   Nature Communications

Increased sensitivity to climate change in disturbed ecosystems

(2015) György Kröel-Dulay et al.   Nature Communications

PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

(2015) Hyun S. Gweon et al.   Methods in Ecology and Evolution

Resistance and resilience of a grassland ecosystem to climate extremes

(2014) David L. Hoover et al.   ECOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Climate Change Induces Shifts in Abundance and Activity Pattern of Bacteria and Archaea Catalyzing Major Transformation Steps in Nitrogen Turnover in a Soil from a Mid-European Beech Forest

(2014) Silvia Gschwendtner et al.   PLoS One

Demonstrating microbial co-occurrence pattern analyses within and between ecosystems

(2014) Ryan J. Williams et al.   Frontiers in Microbiology

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Warming effects on greenhouse gas fluxes in peatlands are modulated by vegetation composition

(2013) Susan E. Ward et al.   ECOLOGY LETTERS

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

(2013) Romain L Barnard et al.   ISME Journal

Hierarchical responses of plant-soil interactions to climate change: consequences for the global carbon cycle

(2013) Richard D. Bardgett et al.   JOURNAL OF ECOLOGY

Experimental drought reduces the transfer of recently fixed plant carbon to soil microbes and alters the bacterial community composition in a mountain meadow

(2013) Lucia Fuchslueger et al.   NEW PHYTOLOGIST

Effects of drought and N-fertilization on N cycling in two grassland soils

(2013) Adrian A. Hartmann et al.   OECOLOGIA

Soil biotic legacy effects of extreme weather events influence plant invasiveness

(2013) A. Meisner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Controls on soil microbial community stability under climate change

(2013) Franciska T. de Vries et al.   Frontiers in Microbiology

Summer heat and drought extremes trigger unexpected changes in productivity of a temperate annual/biannual plant community

(2012) Freja E. Dreesen et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Land use alters the resistance and resilience of soil food webs to drought

(2012) Franciska T. de Vries et al.   Nature Climate Change

Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Effects of native and exotic range-expanding plant species on taxonomic and functional composition of nematodes in the soil food web

(2011) Elly Morriën et al.   OIKOS

Stability of above-ground and below-ground processes to extreme drought in model grassland ecosystems: Interactions with plant species diversity and soil nitrogen availability

(2011) Juliette M.G. Bloor et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS

Compartmentalization increases food-web persistence

(2011) Daniel B. Stouffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Drying–Rewetting Cycles Affect Fungal and Bacterial Growth Differently in an Arable Soil

(2010) Azadeh Bapiri et al.   MICROBIAL ECOLOGY

The ecological coherence of high bacterial taxonomic ranks

(2010) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Notes on the characterization of prokaryote strains for taxonomic purposes

(2009) B. J. Tindall et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms

(2008) Maria Tourna et al.   ENVIRONMENTAL MICROBIOLOGY