Changes in Bacterial and Fungal Microbiomes Associated with Tomatoes of Healthy and Infected by Fusarium oxysporum f. sp. lycopersici
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Title
Changes in Bacterial and Fungal Microbiomes Associated with Tomatoes of Healthy and Infected by Fusarium oxysporum f. sp. lycopersici
Authors
Keywords
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Journal
MICROBIAL ECOLOGY
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-06-25
DOI
10.1007/s00248-020-01535-4
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Note: Only part of the references are listed.- Impact of Soil Microbial Amendments on Tomato Rhizosphere Microbiome and Plant Growth in Field Soil
- (2020) Andrea Nuzzo et al. MICROBIAL ECOLOGY
- Rhizosphere Microbiomes from Root Knot Nematode Non-infested Plants Suppress Nematode Infection
- (2019) Dongmei Zhou et al. MICROBIAL ECOLOGY
- Fusarium oxysporum f. sp. lycopersici causal agent of vascular wilt disease of tomato: Biology to diversity– A review
- (2019) C. Srinivas et al. SAUDI JOURNAL OF BIOLOGICAL SCIENCES
- Initial soil microbiome composition and functioning predetermine future plant health
- (2019) Zhong Wei et al. Science Advances
- Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
- (2019) Víctor J. Carrión et al. SCIENCE
- Selection of an Endophytic Streptomyces sp. Strain DEF09 From Wheat Roots as a Biocontrol Agent Against Fusarium graminearum
- (2019) Elena Maria Colombo et al. Frontiers in Microbiology
- Environmental Adaptations, Ecological Filtering, and Dispersal Central to Insect Invasions
- (2018) David Renault et al. Annual Review of Entomology
- Disease-induced assemblage of a plant-beneficial bacterial consortium
- (2018) Roeland L. Berendsen et al. ISME Journal
- Keystone taxa as drivers of microbiome structure and functioning
- (2018) Samiran Banerjee et al. NATURE REVIEWS MICROBIOLOGY
- Emerging microbial biocontrol strategies for plant pathogens
- (2018) Sharifah Farhana Syed Ab Rahman et al. PLANT SCIENCE
- Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
- (2018) Lingfei Hu et al. Nature Communications
- ‘NetShift’: a methodology for understanding ‘driver microbes’ from healthy and disease microbiome datasets
- (2018) Bhusan K. Kuntal et al. ISME Journal
- Rhizosphere microbiome structure alters to enable wilt resistance in tomato
- (2018) Min-Jung Kwak et al. NATURE BIOTECHNOLOGY
- Rhizobia: a potential biocontrol agent for soilborne fungal pathogens
- (2017) Krishnashis Das et al. FOLIA MICROBIOLOGICA
- Simplified and representative bacterial community of maize roots
- (2017) Ben Niu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Current Insights into the Role of Rhizosphere Bacteria in Disease Suppressive Soils
- (2017) Ruth Gómez Expósito et al. Frontiers in Microbiology
- Effect of biochar additions to soil on nitrogen leaching, microbial biomass and bacterial community structure
- (2016) Nan Xu et al. EUROPEAN JOURNAL OF SOIL BIOLOGY
- Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences
- (2016) Vinita Deshpande et al. MYCOLOGIA
- Shifting from priming of salicylic acid- to jasmonic acid-regulated defences by Trichoderma protects tomato against the root knot nematode Meloidogyne incognita
- (2016) Ainhoa Martínez-Medina et al. NEW PHYTOLOGIST
- Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management
- (2016) R. Poudel et al. PHYTOPATHOLOGY
- Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil
- (2016) Samiran Banerjee et al. SOIL BIOLOGY & BIOCHEMISTRY
- Probiotic Diversity Enhances Rhizosphere Microbiome Function and Plant Disease Suppression
- (2016) Jie Hu et al. mBio
- Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
- (2016) Matthew T. Agler et al. PLOS BIOLOGY
- Networking in the Plant Microbiome
- (2016) Marcel G. A. van der Heijden et al. PLOS BIOLOGY
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Roots Shaping Their Microbiome: Global Hotspots for Microbial Activity
- (2015) Barbara Reinhold-Hurek et al. Annual Review of Phytopathology
- A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts
- (2015) R. Henrik Nilsson et al. MICROBES AND ENVIRONMENTS
- The importance of the microbiome of the plant holobiont
- (2015) Philippe Vandenkoornhuyse et al. NEW PHYTOLOGIST
- Structure, variation, and assembly of the root-associated microbiomes of rice
- (2015) Joseph Edwards et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping
- (2015) Rakesh Santhanam et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The ecology of the microbiome: Networks, competition, and stability
- (2015) K. Z. Coyte et al. SCIENCE
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- STAMP: statistical analysis of taxonomic and functional profiles
- (2014) Donovan H. Parks et al. BIOINFORMATICS
- Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances
- (2013) Rachel I Adams et al. ISME Journal
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- Biocontrol of tomato wilt disease byBacillus subtilisisolates from natural environments depends on conserved genes mediating biofilm formation
- (2012) Yun Chen et al. ENVIRONMENTAL MICROBIOLOGY
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
- (2012) Sahar Abubucker et al. PLoS Computational Biology
- Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
- (2011) R. Mendes et al. SCIENCE
- Metagenomic biomarker discovery and explanation
- (2011) Nicola Segata et al. GENOME BIOLOGY
- Real-time PCR for differential determination of the tomato wilt fungus, Fusarium oxysporum f. sp. lycopersici, and its races
- (2010) Keigo Inami et al. JOURNAL OF GENERAL PLANT PATHOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
- (2008) Marcel G. A. van der Heijden et al. ECOLOGY LETTERS
- Effect of soil amendments and biological control agents (BCAs) on soil-borne root diseases caused by Pyrenochaeta lycopersici and Verticillium albo-atrum in organic greenhouse tomato production systems
- (2008) Charilaos Giotis et al. EUROPEAN JOURNAL OF PLANT PATHOLOGY
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