Predicting disease occurrence with high accuracy based on soil macroecological patterns of Fusarium wilt

Soil management under tomato-wheat rotation increases the suppressive response against Fusarium wilt and tomato shoot growth by changing the microbial composition and chemical parameters

(2020) Ugo De Corato et al.   APPLIED SOIL ECOLOGY

The Microbiome Stress Project: Toward a Global Meta-Analysis of Environmental Stressors and Their Effects on Microbial Communities

(2019) Jennifer D. Rocca et al.   Frontiers in Microbiology

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

(2019) Jingying Zhang et al.   NATURE BIOTECHNOLOGY

Streptomyces Strains Induce Resistance to Fusarium oxysporum f. sp. lycopersici Race 3 in Tomato Through Different Molecular Mechanisms

(2019) Sakineh Abbasi et al.   Frontiers in Microbiology

Modification of Rhizosphere Bacterial Community Structure and Functional Potentials to Control Pseudostellaria heterophylla Replant Disease

(2019) Linkun Wu et al.   PLANT DISEASE

Antagonistic activity and mechanism of an isolated Streptomyces corchorusii stain AUH-1 against phytopathogenic fungi

(2019) Yong Yang et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Streptomyces griseocarneus R132 controls phytopathogens and promotes growth of pepper (Capsicum annuum)

(2019) Rhavena Graziela Liotti et al.   BIOLOGICAL CONTROL

Composts from green sources show an increased suppressiveness to soilborne plant pathogenic fungi: Relationships between physicochemical properties, disease suppression, and the microbiome

(2019) Ugo De Corato et al.   CROP PROTECTION

Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean

(2018) Lucas William Mendes et al.   ISME Journal

Belowground Microbiota and the Health of Tree Crops

(2018) Jesús Mercado-Blanco et al.   Frontiers in Microbiology

Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models

(2018) Aeriel Belk et al.   Genes

Soil pre-fumigation could effectively improve the disease suppressiveness of biofertilizer to banana Fusarium wilt disease by reshaping the soil microbiome

(2018) Zongzhuan Shen et al.   BIOLOGY AND FERTILITY OF SOILS

Qiita: rapid, web-enabled microbiome meta-analysis

(2018) Antonio Gonzalez et al.   NATURE METHODS

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota

(2018) Fernanda Cornejo-Granados et al.   PeerJ

Root exudates drive the soil-borne legacy of aboveground pathogen infection

(2018) Jun Yuan et al.   Microbiome

The gut microbiota at the intersection of diet and human health

(2018) Christopher L. Gentile et al.   SCIENCE

Salt-responsive gut commensal modulates TH17 axis and disease

(2017) Nicola Wilck et al.   NATURE

Bio-fertilizer application induces soil suppressiveness against Fusarium wilt disease by reshaping the soil microbiome

(2017) Wu Xiong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Inducing the rhizosphere microbiome by biofertilizer application to suppress banana Fusarium wilt disease

(2017) Lin Fu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distinct roles for soil fungal and bacterial communities associated with the suppression of vanilla Fusarium wilt disease

(2017) Wu Xiong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

(2017) Claire Duvallet et al.   Nature Communications

Detecting macroecological patterns in bacterial communities across independent studies of global soils

(2017) Kelly S. Ramirez et al.   Nature Microbiology

Relationships of decomposability and C/N ratio in different types of organic matter with suppression of Fusarium oxysporum and microbial communities during reductive soil disinfestation

(2016) Liangliang Liu et al.   BIOLOGICAL CONTROL

Illumina-based analysis of the rhizosphere microbial communities associated with healthy and wilted Lanzhou lily (Lilium davidii var. unicolor) plants grown in the field

(2016) Qianhan Shang et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions

(2016) Nielson T. Baxter et al.   Genome Medicine

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Declined soil suppressiveness to Fusarium oxysporum by rhizosphere microflora of cotton in soil sickness

(2015) Xiaogang Li et al.   BIOLOGY AND FERTILITY OF SOILS

Microbial and biochemical basis of a Fusarium wilt-suppressive soil

(2015) Jae-Yul Cha et al.   ISME Journal

Fusarium Wilt of Banana

(2015) Randy C. Ploetz   PHYTOPATHOLOGY

Pineapple–banana rotation reduced the amount of Fusarium oxysporum more than maize–banana rotation mainly through modulating fungal communities

(2015) Beibei Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Direct and indirect effects of climate change on soil microbial and soil microbial-plant interactions: What lies ahead?

(2015) Aimée T. Classen et al.   Ecosphere

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets

(2013) Omry Koren et al.   PLoS Computational Biology

A comprehensive evaluation of multicategory classification methods for microbiomic data

(2013) Alexander Statnikov et al.   Microbiome

Application of bio-organic fertilizer can control Fusarium wilt of cucumber plants by regulating microbial community of rhizosphere soil

(2012) Meihua Qiu et al.   BIOLOGY AND FERTILITY OF SOILS

Manipulating the soil microbiome to increase soil health and plant fertility

(2012) Jacqueline M. Chaparro et al.   BIOLOGY AND FERTILITY OF SOILS

Soil Suppressiveness to Fusarium Disease: Shifts in Root Microbiome Associated with Reduction of Pathogen Root Colonization

(2012) Eyal Klein et al.   PHYTOPATHOLOGY

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

(2012) Daniel McDonald et al.   GigaScience

High levels of diversity in Fusarium oxysporum from non-cultivated ecosystems in Australia

(2011) Matthew H. Laurence et al.   Fungal Biology

Development of Novel Drugs from Marine Surface Associated Microorganisms

(2010) Anahit Penesyan et al.   Marine Drugs

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Fungal community diversity and soil health in intensive potato cropping systems of the east Po valley, northern Italy

(2009) L.M. Manici et al.   ANNALS OF APPLIED BIOLOGY

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

(2009) Isabelle Pieretti et al.   BMC GENOMICS

Changes in land use alter the structure of bacterial communities in Western Amazon soils

(2009) Ederson da C Jesus et al.   ISME Journal

Control of Fusarium wilt disease of cucumber plants with the application of a bioorganic fertilizer

(2008) Shusheng Zhang et al.   BIOLOGY AND FERTILITY OF SOILS

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS