Going back to the roots: the microbial ecology of the rhizosphere

Quantitative imaging of rhizosphere pH and CO2 dynamics with planar optodes

(2013) Stephan Blossfeld et al.   ANNALS OF BOTANY

Microbial community responses to anthropogenically induced environmental change: towards a systems approach

(2013) Andrew Bissett et al.   ECOLOGY LETTERS

Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack

(2013) Zdenka Babikova et al.   ECOLOGY LETTERS

Speak, friend and enter: signalling systems that promote beneficial symbiotic associations in plants

(2013) Giles E. D. Oldroyd   NATURE REVIEWS MICROBIOLOGY

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest

(2013) K. E. Clemmensen et al.   SCIENCE

Soil zymography – A novel in situ method for mapping distribution of enzyme activity in soil

(2013) Marie Spohn et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant Preference for Ammonium versus Nitrate: A Neglected Determinant of Ecosystem Functioning?

(2012) S. Boudsocq et al.   AMERICAN NATURALIST

Microbial Population and Community Dynamics on Plant Roots and Their Feedbacks on Plant Communities

(2012) James D. Bever et al.   Annual Review of Microbiology

Diversity and Natural Functions of Antibiotics Produced by Beneficial and Plant Pathogenic Bacteria

(2012) Jos M. Raaijmakers et al.   Annual Review of Phytopathology

Abiotic Factors Shape Microbial Diversity in Sonoran Desert Soils

(2012) David R. Andrew et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Common Signaling Process that Promotes Mycorrhizal and Oomycete Colonization of Plants

(2012) Ertao Wang et al.   CURRENT BIOLOGY

Legacy effects of aboveground-belowground interactions

(2012) Olga Kostenko et al.   ECOLOGY LETTERS

Microbial phylotype composition and diversity predicts plant productivity and plant-soil feedbacks

(2012) James D. Bever et al.   ECOLOGY LETTERS

Effects of plant host species and plant community richness on streptomycete community structure

(2012) Matthew G. Bakker et al.   FEMS MICROBIOLOGY ECOLOGY

Arbuscular mycorrhizal fungi mediate below-ground plant-herbivore interactions: a phylogenetic study

(2012) Rachel L. Vannette et al.   FUNCTIONAL ECOLOGY

Impacts of 3 years of elevated atmospheric CO2on rhizosphere carbon flow and microbial community dynamics

(2012) Barbara Drigo et al.   GLOBAL CHANGE BIOLOGY

The role of flavonoids in root-rhizosphere signalling: opportunities and challenges for improving plant-microbe interactions

(2012) S. Hassan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Costs of resistance to fungal pathogens in genetically modified wheat

(2012) Simon L. Zeller et al.   Journal of Plant Ecology

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

A sensitive LC-ESI-Q-TOF-MS method reveals novel phytosiderophores and phytosiderophore-iron complexes in barley

(2012) Munkhtsetseg Tsednee et al.   NEW PHYTOLOGIST

13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline

(2012) S. E. Hannula et al.   NEW PHYTOLOGIST

Positive feedbacks to growth of an invasive grass through alteration of nitrogen cycling

(2012) Marissa R. Lee et al.   OECOLOGIA

Metabolic and Transcriptomic Changes Induced in Arabidopsis by the Rhizobacterium Pseudomonas fluorescens SS101

(2012) J. E. van de Mortel et al.   PLANT PHYSIOLOGY

Microbe-Associated Molecular Patterns-Triggered Root Responses Mediate Beneficial Rhizobacterial Recruitment in Arabidopsis

(2012) V. Lakshmanan et al.   PLANT PHYSIOLOGY

Dynamics of Seed-Borne Rice Endophytes on Early Plant Growth Stages

(2012) Pablo R. Hardoim et al.   PLoS One

Rapid responses of soil microorganisms improve plant fitness in novel environments

(2012) J. A. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant-soil feedbacks provide an additional explanation for diversity-productivity relationships

(2012) A. Kulmatiski et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Endophytic Insect-Parasitic Fungi Translocate Nitrogen Directly from Insects to Plants

(2012) S. W. Behie et al.   SCIENCE

Potato cultivar type affects the structure of ammonia oxidizer communities in field soil under potato beyond the rhizosphere

(2012) Armando Cavalcante Franco Dias et al.   SOIL BIOLOGY & BIOCHEMISTRY

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

The biology of strigolactones

(2012) Carolien Ruyter-Spira et al.   TRENDS IN PLANT SCIENCE

Interactions between above- and belowground organisms modified in climate change experiments

(2012) Karen Stevnbak et al.   Nature Climate Change

Land use alters the resistance and resilience of soil food webs to drought

(2012) Franciska T. de Vries et al.   Nature Climate Change

Niche construction by the invasive Asian knotweeds (species complex Fallopia): impact on activity, abundance and community structure of denitrifiers and nitrifiers

(2011) Nicolas Dassonville et al.   BIOLOGICAL INVASIONS

Antibiotics as Signal Molecules

(2011) Diego Romero et al.   CHEMICAL REVIEWS

Belowground biodiversity effects of plant symbionts support aboveground productivity

(2011) Cameron Wagg et al.   ECOLOGY LETTERS

Rice root-associated bacteria: insights into community structures across 10 cultivars

(2011) Pablo Rodrigo Hardoim et al.   FEMS MICROBIOLOGY ECOLOGY

Soil and Cultivar Type Shape the Bacterial Community in the Potato Rhizosphere

(2011) Özgül İnceoğlu et al.   MICROBIAL ECOLOGY

Soil, But Not Cultivar, Shapes the Structure of Arbuscular Mycorrhizal Fungal Assemblages Associated with Strawberry

(2011) Juan C. Santos-González et al.   MICROBIAL ECOLOGY

Spatial patterns of plant diversity below-ground as revealed by DNA barcoding

(2011) PRASAD R. KESANAKURTI et al.   MOLECULAR ECOLOGY

Is diversification history of maize influencing selection of soil bacteria by roots?

(2011) MARIE-LARA BOUFFAUD et al.   MOLECULAR ECOLOGY

Modulation of Host Immunity by Beneficial Microbes

(2011) Christos Zamioudis et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing

(2011) Alex J. Dumbrell et al.   NEW PHYTOLOGIST

Conservation and Diversity of Seed Associated Endophytes in Zea across Boundaries of Evolution, Ethnography and Ecology

(2011) David Johnston-Monje et al.   PLoS One

Nodulation-gene-inducing flavonoids increase overall production of autoinducers and expression of N-acyl homoserine lactone synthesis genes in rhizobia

(2011) Francisco Pérez-Montaño et al.   RESEARCH IN MICROBIOLOGY

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Rhizosphere isoflavones (daidzein and genistein) levels and their relation to the microbial community structure of mono-cropped soybean soil in field and controlled conditions

(2011) Zhong-Yuan Guo et al.   SOIL BIOLOGY & BIOCHEMISTRY

The dynamics of oxygen concentration, pH value, and organic acids in the rhizosphere of Juncus spp.

(2011) Stephan Blossfeld et al.   SOIL BIOLOGY & BIOCHEMISTRY

Towards food, feed and energy crops mitigating climate change

(2011) Laurent Philippot et al.   TRENDS IN PLANT SCIENCE

Successful joint ventures of plants: arbuscular mycorrhiza and beyond

(2011) Flavia Ercolin et al.   TRENDS IN PLANT SCIENCE

Effects of Plant Genotype and Growth Stage on the Betaproteobacterial Communities Associated with Different Potato Cultivars in Two Fields

(2010) O. Inceoglu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial Communities in the Rhizosphere of Biofuel Crops Grown on Marginal Lands as Evaluated by 16S rRNA Gene Pyrosequences

(2010) Ederson da C. Jesus et al.   BioEnergy Research

Native shrub reestablishment in exotic annual grasslands: Do ecosystem processes recover?

(2010) S. G. Yelenik et al.   ECOLOGICAL APPLICATIONS

Divergent composition but similar function of soil food webs of individual plants: plant species and community effects

(2010) T. M. Bezemer et al.   ECOLOGY

Soil microbes drive the classic plant diversity–productivity pattern

(2010) Stefan A. Schnitzer et al.   ECOLOGY

Reduction of rare soil microbes modifies plant-herbivore interactions

(2010) W. H. Gera Hol et al.   ECOLOGY LETTERS

Soil microbial community structure in cucumber rhizosphere of different resistance cultivars to fusarium wilt

(2010) Huaiying Yao et al.   FEMS MICROBIOLOGY ECOLOGY

PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa

(2010) Nicole Weinert et al.   FEMS MICROBIOLOGY ECOLOGY

Characterisation of microbial communities colonising the hyphal surfaces of arbuscular mycorrhizal fungi

(2010) Tanja R Scheublin et al.   ISME Journal

Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica

(2010) Lia C R S Teixeira et al.   ISME Journal

Determinants of the distribution of nitrogen-cycling microbial communities at the landscape scale

(2010) D Bru et al.   ISME Journal

Elicitation of foliar resistance mechanisms transiently impairs root association with arbuscular mycorrhizal fungi

(2010) Miriam de Román et al.   JOURNAL OF ECOLOGY

Fungal lipochitooligosaccharide symbiotic signals in arbuscular mycorrhiza

(2010) Fabienne Maillet et al.   NATURE

Virulence of soil-borne pathogens and invasion by Prunus serotina

(2010) Kurt O. Reinhart et al.   NEW PHYTOLOGIST

Rooting theories of plant community ecology in microbial interactions

(2010) James D. Bever et al.   TRENDS IN ECOLOGY & EVOLUTION

How understanding aboveground–belowground linkages can assist restoration ecology

(2010) Paul Kardol et al.   TRENDS IN ECOLOGY & EVOLUTION

Helping plants to deal with insects: the role of beneficial soil-borne microbes

(2010) Ana Pineda et al.   TRENDS IN PLANT SCIENCE

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

(2010) Stéphane Uroz et al.   Environmental Microbiology Reports

Role of fungal trehalose and bacterial thiamine in the improved survival and growth of the ectomycorrhizal fungus Laccaria bicolor S238N and the helper bacterium Pseudomonas fluorescens BBc6R8

(2010) A. Deveau et al.   Environmental Microbiology Reports

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

Plants, Mycorrhizal Fungi, and Bacteria: A Network of Interactions

(2009) Paola Bonfante et al.   Annual Review of Microbiology

InvasiveAndropogon gayanus(gamba grass) is an ecosystem transformer of nitrogen relations in Australian savanna

(2009) N. A. Rossiter-Rachor et al.   ECOLOGICAL APPLICATIONS

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Exogenous glucosinolate produced by Arabidopsis thaliana has an impact on microbes in the rhizosphere and plant roots

(2009) Mélanie Bressan et al.   ISME Journal

Plant neighborhood control of arbuscular mycorrhizal community composition

(2009) Natasha Teutsch Hausmann et al.   NEW PHYTOLOGIST

Soil-borne microorganisms and soil-type affect pyrrolizidine alkaloids in Jacobaea vulgaris

(2009) Lotte Joosten et al.   PLANT AND SOIL

Plant-microbe-soil interactions in the rhizosphere: an evolutionary perspective

(2009) Hans Lambers et al.   PLANT AND SOIL

Rhizosphere: biophysics, biogeochemistry and ecological relevance

(2009) Philippe Hinsinger et al.   PLANT AND SOIL

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

Evidence for biological nitrification inhibition in Brachiaria pastures

(2009) G. V. Subbarao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Within-Year Soil Legacies Contribute to Strong Priority Effects of Exotics on Native California Grassland Communities

(2009) Emily Grman et al.   RESTORATION ECOLOGY

Beneficial Biofuels--The Food, Energy, and Environment Trilemma

(2009) D. Tilman et al.   SCIENCE

Home-field advantage accelerates leaf litter decomposition in forests

(2009) Edward Ayres et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant species influence microbial diversity and carbon allocation in the rhizosphere

(2009) Natalia Ladygina et al.   SOIL BIOLOGY & BIOCHEMISTRY

Establishing nitrogen-fixing symbiosis with legumes: how many rhizobium recipes?

(2009) Catherine Masson-Boivin et al.   TRENDS IN MICROBIOLOGY

PLANT–SOIL–MICROORGANISM INTERACTIONS: HERITABLE RELATIONSHIP BETWEEN PLANT GENOTYPE AND ASSOCIATED SOIL MICROORGANISMS

(2008) Jennifer A. Schweitzer et al.   ECOLOGY

NOVEL WEAPONS: INVASIVE PLANT SUPPRESSES FUNGAL MUTUALISTS IN AMERICA BUT NOT IN ITS NATIVE EUROPE

(2008) Ragan M. Callaway et al.   ECOLOGY

Preferences for 15N-ammonium, 15N-nitrate, and 15N-glycine differ among dominant exotic and subordinate native grasses from a California oak woodland

(2008) Zachary T. Aanderud et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates

(2008) S. Henry et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of plant genotype and growth stage on the structure of bacterial communities associated with potato (Solanum tuberosum L.)

(2008) Leo Van Overbeek et al.   FEMS MICROBIOLOGY ECOLOGY

Colonization of adventitious roots ofMedicago truncatulabyPseudomonas fluorescensC7R12 as affected by arbuscular mycorrhiza

(2008) Barbara Pivato et al.   FEMS MICROBIOLOGY LETTERS

Selective progressive response of soil microbial community to wild oat roots

(2008) Kristen M DeAngelis et al.   ISME Journal

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

Unravelling below-ground plant distributions: a real-time polymerase chain reaction method for quantifying species proportions in mixed root samples

(2008) L. MOMMER et al.   Molecular Ecology Resources

Arbuscular mycorrhiza: the mother of plant root endosymbioses

(2008) Martin Parniske   NATURE REVIEWS MICROBIOLOGY

Biochemical cycling in the rhizosphere having an impact on global change

(2008) L. Philippot et al.   PLANT AND SOIL

Local response of bacterial densities and enzyme activities to elevated atmospheric CO2 and different N supply in the rhizosphere of Phaseolus vulgaris L.

(2008) Susan Haase et al.   SOIL BIOLOGY & BIOCHEMISTRY